Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_25295 and PS417_25300 are separated by 138 nucleotidesPS417_25300 and PS417_25305 are separated by 1 nucleotidesPS417_25305 and PS417_25310 are separated by 11 nucleotidesPS417_25310 and PS417_25315 are separated by 94 nucleotides PS417_25295: PS417_25295 - hypothetical protein, at 5,477,612 to 5,478,214 _25295 PS417_25300: PS417_25300 - methionine ABC transporter ATP-binding protein, at 5,478,353 to 5,479,063 _25300 PS417_25305: PS417_25305 - peptide ABC transporter permease, at 5,479,065 to 5,480,330 _25305 PS417_25310: PS417_25310 - hypothetical protein, at 5,480,342 to 5,480,854 _25310 PS417_25315: PS417_25315 - membrane protein, at 5,480,949 to 5,481,647 _25315
Group Condition PS417_25295 PS417_25300 PS417_25305 PS417_25310 PS417_25315
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.1 N.D. -0.5 -1.2 -0.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.1 N.D. -0.6 -0.8 -1.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.4 N.D. -0.0 -0.5 -1.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.9 N.D. -0.3 -1.3 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.0 N.D. -0.4 -0.7 -1.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 N.D. -0.6 -0.7 -0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.2 N.D. -0.2 -0.5 -1.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.1 N.D. -0.3 +0.2 -1.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -0.4 N.D. -0.2 +0.4 -1.3
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.3 N.D. +0.2 +0.0 -2.0
carbon source Carbon source D-Mannitol 10 mM -0.9 N.D. +0.2 +0.3 -0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.2 N.D. +0.6 +0.4 -1.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.8 N.D. -0.3 -0.5 -1.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Cysteine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.1 N.D. -0.3 +0.7 -1.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.3 N.D. -0.4 +0.3 -1.2
seeds Growth on radish seeds for 72 hours -0.5 N.D. -0.4 +0.8 -0.6
no stress control on plate growth on LB_noSalt plate +0.5 N.D. +0.2 +0.3 -1.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.8 N.D. +0.1 -0.1 -1.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.6 N.D. -0.3 +0.3 -1.1
soil soil sample 7; outgrowth in LB +0.5 N.D. -0.4 -1.0 +1.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.4 N.D. +0.2 +0.9 +0.6
rhizosphere rhizosphere sample 8; outgrowth in LB -0.2 N.D. -0.0 -0.5 +1.6
stress R2A with Fusaric 120 ug/mL +0.6 N.D. +0.6 -0.8 +0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.2 N.D. -0.0 -0.4 +1.6
soil soil sample 5; outgrowth in LB -0.3 N.D. -0.5 -0.6 +2.3
root root sample 6; outgrowth in LB -0.1 N.D. +0.2 -0.3 +2.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.2 N.D. +0.5 +0.8 +0.9
rhizosphere rhizosphere sample 1; outgrowth in LB -0.2 N.D. +0.2 +0.2 +2.0
rhizosphere rhizosphere sample 2; outgrowth in LB +0.8 N.D. +0.3 -0.2 +1.7
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.1 N.D. -0.0 +0.2 +1.6
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