Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_25285	PS417_25290	PS417_25295	PS417_25300	PS417_25305
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.1	+0.2	-1.5	N.D.	-0.4
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.4	-0.1	-1.1	N.D.	-0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	-0.7	-1.4	N.D.	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.1	-1.1	-0.7	N.D.	+0.1
phage	Wcs_1	-0.3	-0.8	-0.7	N.D.	+0.1
motility	outer cut, LB soft agar motility assay	-0.2	-0.8	-0.4	N.D.	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	-0.9	-0.6	N.D.	-0.1
phage	JP1 MOI 1	-0.2	-1.7	-0.2	N.D.	+0.7
seeds	Growth on radish seeds for 72 hours	-0.1	-1.2	+0.2	N.D.	-0.2
carbon source	L-Valine (C)	-0.4	-1.0	-0.3	N.D.	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	+0.5	-1.1	N.D.	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.6	-1.2	N.D.	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	+0.4	-0.9	N.D.	-0.3
seeds	Growth on radish seeds for 72 hours	+0.2	-0.8	+0.4	N.D.	-0.3
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	-0.1	+0.3	-0.9	N.D.	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.2	-0.9	-0.2	N.D.	+0.5
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	+0.6	-0.8	N.D.	+0.3
carbon source	Carbon source D-Mannitol 10 mM	-0.0	+0.5	-0.9	N.D.	+0.2
stress	R2A with Fusaric 120 ug/mL	+0.2	-0.7	-0.3	N.D.	+0.6
stress	Gentamicin 0.008 mg/ml	+0.1	-0.5	+0.7	N.D.	-0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	-0.9	+1.1	N.D.	-0.0
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.2	+0.9	-0.6	N.D.	-0.3
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	+0.2	+0.4	-0.7	N.D.	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.1	+0.7	+0.3	N.D.	-0.4
nophagecontrol	Only library	-0.1	+0.6	+0.5	N.D.	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.1	+1.4	-0.4	N.D.	-0.2
seeds	Growth on radish seeds for 24 hours	+0.3	-0.5	+0.6	N.D.	+0.3
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.5	-0.3	+0.8	N.D.	+0.3
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.0	+1.1	+0.4	N.D.	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.2	+0.9	+0.4	N.D.	+0.3