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Fitness for 5 genes in
Pseudomonas simiae WCS417
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500 nt
PS417_02505 and PS417_02510 are separated by 294 nucleotides
PS417_02510 and PS417_02515 are separated by 54 nucleotides
PS417_02515 and PS417_02520 are separated by 139 nucleotides
PS417_02520 and PS417_02525 are separated by 93 nucleotides
PS417_02505: PS417_02505 - membane protease HflC, at 572,328 to 573,194
_02505
PS417_02510: PS417_02510 - ATP phosphoribosyltransferase regulatory subunit, at 573,489 to 574,676
_02510
PS417_02515: PS417_02515 - adenylosuccinate synthetase, at 574,731 to 576,020
_02515
PS417_02520: PS417_02520 - chemotaxis protein, at 576,160 to 578,094
_02520
PS417_02525: PS417_02525 - iron ABC transporter permease, at 578,188 to 579,753
_02525
Group
Condition
PS417
_02505
PS417
_02510
PS417
_02515
PS417
_02520
PS417
_02525
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
N.D.
-7.5
N.D.
-3.0
-0.0
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
N.D.
-9.0
N.D.
-1.0
+0.1
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
N.D.
-8.2
N.D.
-0.9
-0.3
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
N.D.
-8.8
N.D.
-0.5
+0.0
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
N.D.
-8.9
N.D.
-0.4
+0.1
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
N.D.
-7.1
N.D.
-1.7
+0.0
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
N.D.
-8.1
N.D.
-0.8
+0.2
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
N.D.
-6.9
N.D.
-1.2
-0.0
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
N.D.
-7.4
N.D.
-0.1
+0.1
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
N.D.
-7.3
N.D.
-0.5
+0.4
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
N.D.
-6.9
N.D.
-0.7
+0.3
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
N.D.
-7.3
N.D.
+0.0
+0.1
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
N.D.
-6.9
N.D.
-0.2
+0.1
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
N.D.
-6.9
N.D.
-0.1
+0.1
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
N.D.
-6.8
N.D.
-0.1
+0.2
carbon source
L-Leucine (C)
N.D.
-6.6
N.D.
-0.0
-0.1
carbon source
L-Glutamine (C)
N.D.
-6.7
N.D.
+0.1
-0.0
carbon source
Uridine (C)
N.D.
-6.7
N.D.
+0.2
-0.0
carbon source
L-Arginine (C)
N.D.
-6.8
N.D.
+0.2
+0.1
carbon source
Uridine (C)
N.D.
-6.5
N.D.
+0.0
-0.0
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
N.D.
-3.1
N.D.
-3.5
+0.2
carbon source
2-Deoxy-D-Ribose (C)
N.D.
-6.8
N.D.
+0.3
+0.1
carbon source
L-Valine (C)
N.D.
-6.4
N.D.
+0.3
-0.2
carbon source
NAG (C)
N.D.
-6.2
N.D.
+0.1
-0.1
phage moi 100
Time6-phageFRS
N.D.
-6.1
N.D.
-0.3
+0.2
carbon source
L-Asparagine (C)
N.D.
-6.3
N.D.
+0.2
-0.0
carbon source
L-Alanine (C)
N.D.
-6.4
N.D.
+0.2
+0.2
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
N.D.
-6.0
N.D.
-0.2
+0.3
carbon source
L-Valine (C)
N.D.
-5.8
N.D.
+0.4
-0.2
carbon source
2-Deoxy-D-Ribose 10 mM (C)
N.D.
-5.7
N.D.
+0.4
-0.0
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