Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_25250 and PS417_25255 are separated by 90 nucleotidesPS417_25255 and PS417_25260 are separated by 15 nucleotidesPS417_25260 and PS417_25265 are separated by 48 nucleotidesPS417_25265 and PS417_25270 overlap by 4 nucleotides PS417_25250: PS417_25250 - 6,7-dimethyl-8-ribityllumazine synthase, at 5,470,882 to 5,471,358 _25250 PS417_25255: PS417_25255 - 3,4-dihydroxy-2-butanone 4-phosphate synthase, at 5,471,449 to 5,472,540 _25255 PS417_25260: PS417_25260 - riboflavin synthase subunit alpha, at 5,472,556 to 5,473,218 _25260 PS417_25265: PS417_25265 - diaminohydroxyphosphoribosylaminopyrimidine deaminase, at 5,473,267 to 5,474,403 _25265 PS417_25270: PS417_25270 - NrdR family transcriptional regulator, at 5,474,400 to 5,474,864 _25270
Group Condition PS417_25250 PS417_25255 PS417_25260 PS417_25265 PS417_25270
motility inner cut, LB soft agar motility assay N.D. N.D. N.D. N.D. -2.7
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. -2.1
motility outer cut, LB soft agar motility assay N.D. N.D. N.D. N.D. -2.0
phage JP1 MOI 1 N.D. N.D. N.D. N.D. -1.9
seeds Growth on radish seeds for 72 hours N.D. N.D. N.D. N.D. -1.9
liquid stress Scopoletin 3 mM; liquid stress N.D. N.D. N.D. N.D. -1.8
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. -1.7
rhizosphere rhizosphere sample 1; outgrowth in LB N.D. N.D. N.D. N.D. -1.7
carbon source Deoxyribonucleic from herring sperm 5 mg/mL (C) N.D. N.D. N.D. N.D. -1.6
motility outer cut, LB soft agar motility assay N.D. N.D. N.D. N.D. -1.6
motility outer cut, LB soft agar motility assay N.D. N.D. N.D. N.D. -1.6
motility inner cut, LB soft agar motility assay N.D. N.D. N.D. N.D. -1.5
stress LB_noSalt with Chloride 1100 mM N.D. N.D. N.D. N.D. -1.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. N.D. +1.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. +1.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. +1.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. +1.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. +1.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. +1.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. N.D. +2.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. N.D. +2.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. N.D. +2.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. +2.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. +2.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. +2.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. +2.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. +2.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. +2.6
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. N.D. +2.9
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. N.D. +3.2
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