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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF4896 and GFF4897 are separated by 231 nucleotides
GFF4897 and GFF4898 are separated by 190 nucleotides
GFF4898 and GFF4899 are separated by 310 nucleotides
GFF4899 and GFF4900 are separated by 121 nucleotides
GFF4896 - Integrase, at 262,745 to 263,944
GFF4896
GFF4897 - Probable ALANIN-rich signal peptide protein, at 264,176 to 264,538
GFF4897
GFF4898 - no description, at 264,729 to 264,959
GFF4898
GFF4899 - Transcriptional regulator, Crp/Fnr family, at 265,270 to 265,920
GFF4899
GFF4900 - no description, at 266,042 to 266,299
GFF4900
Group
Condition
GFF4896
GFF4897
GFF4898
GFF4899
GFF4900
phage
phage_bap4
-0.1
+0.0
-0.4
-0.1
N.D.
complex community
Community=arabino-guar; Passage=4
+0.0
+0.1
-0.1
-0.5
N.D.
phage
phage_bap4
-0.1
-0.1
-0.2
-0.0
N.D.
complex community
Community=arabino-guar; Passage=4
-0.1
+0.1
-0.0
-0.3
N.D.
complex community
Community=Kojac gum; Passage=1
-0.0
+0.1
-0.3
-0.0
N.D.
complex community
Community=Locust bean gum; Passage=1
+0.0
+0.1
-0.2
-0.1
N.D.
complex community
Community=guar; Passage=4
-0.1
+0.2
-0.2
-0.1
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.0
+0.1
-0.2
+0.1
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.0
-0.0
-0.2
+0.1
N.D.
complex community
Community=Locust bean gum; Passage=4
+0.2
-0.0
-0.1
-0.2
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.0
+0.0
-0.2
+0.1
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.0
-0.1
-0.1
+0.2
N.D.
vitamin
M9 with Supernatant from Cyptococcus
-0.0
-0.1
+0.1
+0.1
N.D.
complex community
Community=arabino-guar; Passage=4
+0.2
+0.2
-0.3
-0.0
N.D.
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
-0.1
+0.0
+0.2
+0.1
N.D.
vitamin
M9 with Supernatant from Cyptococcus
-0.0
-0.1
+0.2
+0.0
N.D.
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
+0.0
-0.1
+0.1
+0.2
N.D.
complex community
Community=guar; Passage=4
-0.0
+0.3
-0.2
+0.1
N.D.
complex community
Community=Locust bean gum; Passage=4
+0.0
+0.2
+0.2
-0.3
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.1
+0.0
+0.1
+0.1
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.1
+0.0
+0.1
+0.1
N.D.
complex community
Community=Locust bean gum; Passage=4
+0.0
+0.1
+0.2
-0.1
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.0
+0.1
+0.1
+0.2
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.0
+0.0
+0.2
+0.2
N.D.
complex community
Community=Locust bean gum; Passage=4
+0.3
+0.3
-0.1
-0.1
N.D.
complex community
Community=Kojac gum; Passage=4
+0.1
+0.0
+0.2
+0.1
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.1
+0.1
+0.1
+0.2
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.0
+0.1
+0.1
+0.2
N.D.
complex community
Community=guar; Passage=4
+0.2
+0.1
+0.3
+0.2
N.D.
complex community
Community=arabino-guar; Passage=4
+0.1
+0.3
+0.3
+0.0
N.D.
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