Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_25085	PS417_25090	PS417_25095	PS417_25100	PS417_25105
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-0.1	-0.3	-0.2	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	+0.1	-0.7	-0.4	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.1	+0.3	-0.6	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.1	+0.5	-0.5	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-0.1	+0.6	-0.2	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	+0.1	+0.3	-0.4	-0.6
motility	inner cut, LB soft agar motility assay	+0.3	+0.3	-0.4	-0.0	-0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.1	+0.1	+0.5	-0.4	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	+0.1	+0.5	-0.3	-0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	-0.1	+0.9	-0.2	-0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.2	+0.2	+0.7	-0.4	-0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	+0.1	+1.1	-0.4	-0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	+0.4	-0.4	+0.2	+0.1
root	root sample 6; outgrowth in LB	-0.3	+0.1	-0.4	-0.1	+1.3
soil	soil sample 5; outgrowth in LB	-0.0	+0.1	+0.5	-0.1	+0.8
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.2	-0.1	+0.3	-0.1	+1.5
stress	methylglyoxal 0.032 vol%	+0.0	+0.1	-0.2	+0.3	+1.0
soil	soil sample 7; outgrowth in LB	-0.1	-0.0	+0.5	+0.1	+0.9
rhizosphere	rhizosphere sample 8; outgrowth in LB	+0.3	+0.0	+0.0	-0.1	+1.3
soil	soil sample 8; outgrowth in LB	+0.1	+0.2	+0.6	-0.1	+0.9
stress	Nalidixic 0.025 mg/ml	-0.2	-0.1	+0.3	+0.9	+0.8
solid stress	Fraxetin 3 mM; solid stress	+0.2	+0.1	+0.5	+0.4	+0.5
phage	P. simiae OR1 MOI 0.1	-0.3	+0.1	+0.9	+0.8	+0.3
soil	soil sample 4; outgrowth in LB	+0.2	+0.1	+0.7	+0.1	+0.9
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.1	+0.1	+0.6	+0.1	+1.5
stress	Gentamicin 0.008 mg/ml	-0.2	-0.1	-0.1	+1.4	+1.3
stress	Tetracycline 0.001 mg/ml	+0.0	-0.0	+0.3	+1.0	+1.0
stress	Neomycin 0.04 mg/ml	+0.1	-0.1	+0.1	+1.6	+1.3
phage	Wcs_1	+0.1	+0.0	+0.1	+1.7	+1.5
stress	Doxycycline hyclate 0.001 mg/ml	-0.1	-0.0	+0.0	+2.4	+2.1