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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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500 nt
GFF4895 and GFF4896 overlap by 4 nucleotides
GFF4896 and GFF4897 are separated by 231 nucleotides
GFF4897 and GFF4898 are separated by 190 nucleotides
GFF4898 and GFF4899 are separated by 310 nucleotides
GFF4895 - FIG074102: hypothetical protein, at 261,612 to 262,748
GFF4895
GFF4896 - Integrase, at 262,745 to 263,944
GFF4896
GFF4897 - Probable ALANIN-rich signal peptide protein, at 264,176 to 264,538
GFF4897
GFF4898 - no description, at 264,729 to 264,959
GFF4898
GFF4899 - Transcriptional regulator, Crp/Fnr family, at 265,270 to 265,920
GFF4899
Group
Condition
GFF4895
GFF4896
GFF4897
GFF4898
GFF4899
phage
phage_bap4
-0.1
-0.1
+0.0
-0.4
-0.1
complex community
Community=arabino-guar; Passage=4
-0.3
-0.1
+0.1
-0.0
-0.3
phage
phage_bap4
-0.1
-0.1
-0.1
-0.2
-0.0
complex community
Community=arabino-guar; Passage=4
+0.0
+0.0
+0.1
-0.1
-0.5
phage
phage_bap4
-0.1
-0.1
-0.0
-0.2
-0.1
complex community
Community=Kojac gum; Passage=1
+0.1
-0.0
+0.1
-0.3
-0.0
complex community
Community=guar; Passage=4
+0.0
-0.1
+0.2
-0.2
-0.1
complex community
Community=Locust bean gum; Passage=1
+0.0
+0.0
+0.1
-0.2
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.0
-0.0
-0.0
-0.2
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.0
-0.0
+0.1
-0.2
+0.1
complex community
Community=Locust bean gum; Passage=4
+0.0
+0.2
-0.0
-0.1
-0.2
complex community
Community=arabino-guar; Passage=4
-0.0
+0.2
+0.2
-0.3
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.1
-0.0
+0.0
-0.2
+0.1
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
-0.0
-0.1
+0.0
+0.2
+0.1
vitamin
M9 with Supernatant from Cyptococcus
+0.1
-0.0
-0.1
+0.1
+0.1
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
+0.0
+0.0
-0.1
+0.1
+0.2
complex community
Community=guar; Passage=4
+0.0
-0.0
+0.3
-0.2
+0.1
complex community
Community=Locust bean gum; Passage=4
-0.1
+0.0
+0.1
+0.2
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.1
+0.0
+0.1
-0.1
+0.2
complex community
Community=guar; Passage=4
+0.2
+0.1
-0.1
+0.1
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.1
-0.0
-0.0
+0.3
-0.0
complex community
Community=Locust bean gum; Passage=4
+0.1
+0.0
+0.2
+0.2
-0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.0
+0.0
+0.0
+0.2
+0.2
complex community
Community=Kojac gum; Passage=4
-0.0
+0.1
+0.0
+0.2
+0.1
complex community
Community=Locust bean gum; Passage=4
+0.0
+0.3
+0.3
-0.1
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.0
+0.1
+0.1
+0.1
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.1
+0.0
+0.1
+0.1
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.0
+0.0
+0.1
+0.1
+0.2
complex community
Community=guar; Passage=4
+0.0
+0.2
+0.1
+0.3
+0.2
complex community
Community=arabino-guar; Passage=4
+0.1
+0.1
+0.3
+0.3
+0.0
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