Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 554 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_25030	PS417_25035	PS417_25040	PS417_25045	PS417_25055
solid stress	80% Methanol 0.5 mM; solid stress	-0.7	-0.1	-0.3	-0.3	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.8	-0.2	+0.3	-0.3	-0.6
carbon source	2'-Deoxyinosine 5 mM (C)	-0.9	+0.1	-0.2	+0.3	-0.5
phage	P. simiae OR Antrim MOI 0.1	-0.8	-0.2	-0.1	+0.4	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.7	+0.2	-0.3	-0.5	+0.3
agar plate interaction control	Taped volatile agar plate with no fungus	-0.8	+0.1	-0.3	+0.4	-0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.5	-0.4	+0.4	+0.2	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.0	-0.4	-0.3	-0.1	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.6	+0.3	+0.4	-0.3	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.7	-0.4	+0.0	+0.3	-0.9
phage	P. simiae OR Antrim MOI 0.1	-0.9	+0.1	-0.3	+0.2	+0.6
supernatant control	Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB	-1.0	+0.3	+0.1	+0.3	+0.2
motility	outer cut, LB soft agar motility assay	-1.1	+0.3	+0.2	+0.2	+0.4
seeds	Growth on radish seeds for 72 hours	+0.9	-0.0	-0.1	-0.2	-0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.9	+0.5	-0.1	+1.1	-0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-0.9	+0.4	+0.1	+0.4	+0.2
phage	JP1 MOI 1	-0.8	+0.4	-0.0	+0.2	+0.4
supernatant control	Vogels_fungal_media; pH 5.5	-0.7	+0.2	+0.0	+0.3	+0.6
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	-0.7	+0.4	+0.1	+0.4	+0.4
phage	JP1 MOI 1	+0.6	-0.1	-0.7	+0.6	+0.2
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+1.1	+0.1	+0.4	-0.1	-0.9
motility	outer cut, LB soft agar motility assay	-0.6	+0.2	+0.3	+0.2	+0.7
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	-0.7	+0.3	+0.4	+0.1	+0.7
supernatant control	Vogels_fungal_media; pH 5.5	-0.4	+0.5	+0.2	+0.7	+0.4
nophagecontrol	Only library	+0.7	+0.3	-0.4	+0.2	+0.5
soil	soil sample 2; outgrowth in LB	+0.9	+0.3	+0.0	-0.1	+0.6
stress	LB_noSalt with Chloride 1100 mM	+0.2	+0.5	+0.5	+0.4	+0.2
rhizosphere	rhizosphere sample 8; outgrowth in LB	+0.3	+0.1	+0.6	-0.1	+0.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.5	+0.2	-0.0	-0.0	+0.3
phage	P. simiae Grant Run MOI 10	+0.9	+0.1	+0.3	+0.4	+0.3