Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_25000	PS417_25005	PS417_25010	PS417_25015	PS417_25025
carbon source	octanoate (C)	-0.1	-0.0	+0.1	-0.8	-0.8
stress	Neomycin 0.04 mg/ml	-0.1	-0.1	-0.2	-0.4	-0.5
motility	outer cut, LB soft agar motility assay	+0.0	-0.1	-0.2	-0.7	-0.4
stress	Tetracycline 0.001 mg/ml	+0.2	-0.9	-0.3	-0.0	-0.1
stress	Nalidixic 0.025 mg/ml	-0.3	-0.5	-0.2	+0.1	-0.3
carbon source	octanoate (C)	+0.0	+0.0	+0.1	-0.7	-0.6
stress	Doxycycline hyclate 0.001 mg/ml	+0.2	-0.9	-0.4	-0.0	-0.0
solid stress	Fraxetin 2 mM; solid stress	-0.3	+0.1	-0.0	-0.7	-0.1
solid stress	Fraxetin 3 mM; solid stress	+0.2	+0.1	+0.1	-1.0	-0.2
solid stress	Fraxetin 3 mM; solid stress	+0.3	-0.2	+0.1	-0.6	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.8	+0.3	+0.2	-0.2	-0.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	+0.2	+0.3	-0.3	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	+0.3	+0.1	-0.6	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.1	+0.3	+0.0	+0.6	-0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	+0.1	-0.0	+1.3	-0.5
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.3	+0.2	+0.1	+0.4	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.5	+0.2	+0.2	-0.3	+0.3
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.3	+0.1	+0.1	+0.8	+0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.2	+0.1	+0.1	+0.8	+0.2
seeds	Growth on radish seeds for 72 hours	+0.2	+0.3	+0.1	+0.4	+0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.5	+0.2	+0.2	+0.5	-0.1
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.1	+0.1	+0.1	+0.8	+0.4
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.1	+0.0	+0.1	+0.8	+0.4
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.2	+0.0	+0.2	+0.7	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	+0.1	+0.2	+0.4	+0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.0	+0.3	+0.1	+0.7	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.4	+0.3	+0.3	+0.3	+0.2
stress	1-ethyl-3-methylimidazolium chloride 200 mM	+0.5	-0.0	+0.1	+0.6	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	+0.2	+0.0	+0.3	+0.8
stress	LB_noSalt with Chloride 1100 mM	+0.4	+0.4	+0.4	+0.4	+0.4