Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF4878 and GFF4879 are separated by 280 nucleotidesGFF4879 and GFF4880 are separated by 365 nucleotidesGFF4880 and GFF4881 are separated by 1465 nucleotidesGFF4881 and GFF4882 are separated by 62 nucleotides GFF4878 - putative lipoprotein, at 246,560 to 246,907 GFF4878 GFF4879 - Transcriptional regulator, Xre family, at 247,188 to 247,424 GFF4879 GFF4880 - y4eB gene in pNGR234a homolog, at 247,790 to 248,104 GFF4880 GFF4881 - HYPOTHETICAL/UNKNOWN PROTEIN, at 249,570 to 249,779 GFF4881 GFF4882 - putative plasmid stabilization protein, at 249,842 to 251,881 GFF4882
Group Condition GFF4878 GFF4879 GFF4880 GFF4881 GFF4882
complex community Community=Locust bean gum; Passage=4 -1.9 +0.0 -0.0 +0.0 -0.1
complex community Community=Locust bean gum; Passage=4 -1.9 +0.0 -0.2 +0.4 +0.4
no phage control no phage control -0.9 +0.0 +0.1 -0.1 -0.1
phage phage_bap4 -0.7 +0.1 -0.0 -0.2 -0.0
complex community Community=Locust bean gum; Passage=4 -1.2 +0.1 +0.1 +0.4 -0.1
phage phage_bap4 -0.5 +0.1 -0.0 -0.1 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL -0.8 +0.1 +0.1 -0.1 +0.1
phage phage_bap4 -0.8 +0.1 +0.1 -0.0 +0.1
complex community Community=guar; Passage=4 -0.5 +0.1 -0.1 +0.1 -0.2
complex community Community=Kojac gum; Passage=4 -0.7 -0.0 +0.3 +0.1 -0.1
complex community Community=arabino-guar; Passage=4 -0.1 -0.0 +0.2 -0.3 -0.1
complex community Community=guar; Passage=4 -0.4 +0.1 +0.1 +0.0 +0.1
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.4 +0.2 +0.1 +0.1 +0.1
complex community Community=guar; Passage=4 -0.8 +0.1 +0.1 +0.7 +0.2
complex community Community=arabino-guar; Passage=4 +0.2 -0.2 +0.2 +0.4 -0.2
complex community Community=arabino-guar; Passage=4 -0.4 +0.3 +0.0 +0.4 +0.1
vitamin M9 with Supernatant from Cyptococcus +0.4 +0.1 +0.2 -0.2 -0.0
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.7 -0.0 +0.1 -0.1 +0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.5 +0.0 +0.1 +0.0 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL +0.4 +0.2 +0.2 -0.0 -0.1
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL +0.4 +0.0 +0.1 +0.2 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.1 +0.1 +0.3 +0.3 +0.1
complex community Community=arabino-guar; Passage=4 +0.8 -0.2 -0.0 +0.3 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.2 +0.1 +0.2 +0.4 -0.0
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL +0.6 +0.1 +0.0 +0.1 -0.0
vitamin M9 with Supernatant from Cyptococcus +0.5 +0.1 +0.1 +0.1 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.2 +0.1 +0.1 +0.3 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.6 +0.1 +0.0 +0.2 +0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.6 +0.1 +0.2 +0.0 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.7 +0.2 +0.1 +0.2 +0.0
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