Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_02480 and PS417_02485 overlap by 1 nucleotidesPS417_02485 and PS417_02490 are separated by 95 nucleotidesPS417_02490 and PS417_02495 are separated by 12 nucleotidesPS417_02495 and PS417_02500 are separated by 96 nucleotides PS417_02480: PS417_02480 - DNA mismatch repair protein, at 566,499 to 568,415 _02480 PS417_02485: PS417_02485 - tRNA delta(2)-isopentenylpyrophosphate transferase, at 568,415 to 569,386 _02485 PS417_02490: PS417_02490 - RNA-binding protein Hfq, at 569,482 to 569,742 _02490 PS417_02495: PS417_02495 - GTPase HflX, at 569,755 to 571,056 _02495 PS417_02500: PS417_02500 - membrane protein, at 571,153 to 572,328 _02500
Group Condition PS417_02480 PS417_02485 PS417_02490 PS417_02495 PS417_02500
solid stress Fraxetin 2 mM; solid stress -0.7 -4.8 N.D. -0.7 N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.2 -5.6 N.D. +0.0 N.D.
carbon source octanoate (C) -1.0 -3.5 N.D. -0.8 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 -4.6 N.D. -0.2 N.D.
solid stress Fraxetin 3 mM; solid stress -1.1 -2.8 N.D. -1.0 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 -4.3 N.D. +0.0 N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.8 -3.9 N.D. -0.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.1 -2.9 N.D. -0.7 N.D.
solid stress Fraxetin 3 mM; solid stress -0.6 -3.1 N.D. -1.0 N.D.
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.4 -4.3 N.D. +0.1 N.D.
solid stress Fraxetin 3 mM; solid stress -0.9 -2.4 N.D. -1.2 N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.2 -4.6 N.D. -0.2 N.D.
carbon source octanoate (C) -0.6 -2.6 N.D. -1.3 N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.7 -4.0 N.D. +0.3 N.D.
solid stress Fraxetin 2 mM; solid stress -0.5 -3.1 N.D. -0.5 N.D.
solid stress Fraxetin 2 mM; solid stress -0.5 -3.1 N.D. -0.5 N.D.
solid stress 80% Methanol 0.5 mM; solid stress -0.5 -3.2 N.D. -0.4 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X -0.6 -2.5 N.D. -0.9 N.D.
carbon source D-Mannose (C) -0.7 -2.9 N.D. -0.4 N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.3 -3.7 N.D. +0.2 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.8 -2.8 N.D. +0.3 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.8 -2.9 N.D. +0.4 N.D.
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.4 -3.3 N.D. +0.7 N.D.
stress Phosphomycin 0.002 mg/ml +1.7 +2.3 N.D. -0.6 N.D.
stress Phosphomycin 0.001 mg/ml +1.9 +2.2 N.D. -0.5 N.D.
stress Phosphomycin 0.003 mg/ml +1.9 +2.6 N.D. -0.5 N.D.
phage Wcs_1 +1.8 +2.7 N.D. +0.0 N.D.
phage P. simiae OR1 MOI 0.1 +1.6 +2.9 N.D. +0.7 N.D.
carbon source Trisodium citrate (C) +2.6 +4.0 N.D. +0.3 N.D.
carbon source Trisodium citrate (C) +2.4 +4.5 N.D. +0.1 N.D.
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