Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 554 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_24950	PS417_24955	PS417_24960	PS417_24965	PS417_24985
phage	P. simiae OR Antrim MOI 10	+0.1	+0.1	-0.1	N.D.	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-0.5	+0.1	N.D.	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	-0.7	+0.1	N.D.	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-0.5	-0.1	N.D.	+0.3
phage	JP1 MOI 1	+0.0	+0.2	+0.2	N.D.	-0.5
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.1	-0.5	+0.2	N.D.	+0.2
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.2	+0.2	+0.1	N.D.	-0.5
stress	Gentamicin 0.008 mg/ml	-0.0	+0.6	-0.1	N.D.	-0.4
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.0	+0.1	-0.4	N.D.	+0.4
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	-0.2	-0.1	N.D.	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	+0.3	-0.2	N.D.	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	+0.3	-0.1	N.D.	+0.4
phage	P. simiae Grant Run MOI 0.1	+0.2	+0.6	-0.1	N.D.	+0.1
phage	P. simiae OR Antrim MOI 1	+0.2	+0.3	-0.0	N.D.	+0.4
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.3	+0.2	+0.2	N.D.	+0.2
root	root sample 6; outgrowth in LB	+0.0	+0.1	+0.2	N.D.	+0.5
soil	soil sample 2; outgrowth in LB	+0.2	+0.5	-0.0	N.D.	+0.2
motility	outer cut, LB soft agar motility assay	+0.2	+0.2	+0.3	N.D.	+0.1
phage	JP1 MOI 0.1	+0.0	+0.1	-0.0	N.D.	+0.8
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	+0.4	+0.1	N.D.	+0.3
motility	inner cut, LB soft agar motility assay	+0.3	+0.1	+0.3	N.D.	+0.2
soil	soil sample 4; outgrowth in LB	+0.2	+0.5	+0.0	N.D.	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.1	-0.0	-0.1	N.D.	+1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	+0.5	+0.2	N.D.	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.1	+0.1	+0.4	N.D.	+0.4
stress	methylglyoxal 0.032 vol%	+0.3	+0.2	+0.1	N.D.	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.2	+0.5	+0.1	N.D.	+0.4
stress	LB_noSalt with Chloride 1100 mM	+0.4	+0.2	+0.2	N.D.	+0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	+0.2	+0.2	N.D.	+0.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	+0.7	+0.4	N.D.	+0.3