Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_24925	PS417_24935	PS417_24945	PS417_24950	PS417_24955
solid stress	80% Methanol 0.5 mM; solid stress	-0.4	-5.2	-0.1	-0.2	-0.2
liquid stress	Fraxetin 2 mM; liquid stress	-0.2	-4.7	-0.0	-0.0	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-2.8	-0.1	-0.1	-0.2
supernatant control	Vogels_fungal_media 0.1X	+0.2	-3.8	+0.0	+0.2	+0.0
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.1	-2.2	-0.1	-0.0	-0.2
solid stress	80% Methanol 3 mM; solid stress	-0.1	-2.0	-0.1	-0.1	-0.2
nophagecontrol	TIme6-nophage	-0.0	-2.5	+0.1	+0.0	-0.1
solid stress	Fraxetin 0.5 mM; solid stress	-0.4	-1.9	-0.0	-0.1	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	-2.1	+0.0	-0.1	-0.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-0.2	-2.4	+0.2	+0.1	+0.3
no stress control on plate	growth on LB_noSalt plate	-0.2	-1.9	+0.0	-0.0	+0.2
seeds	Growth on radish seeds for 72 hours	-0.4	-1.5	-0.2	+0.1	+0.2
carbon source	acetate (C)	+0.0	-1.9	-0.2	+0.1	+0.1
solid stress	Fraxetin 2 mM; solid stress	+0.0	-2.2	+0.3	+0.0	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.1	-2.2	+0.2	+0.3	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	-1.4	+0.2	+0.1	-0.5
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	-0.1	-1.8	-0.2	+0.2	+0.4
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.2	-1.6	-0.2	+0.3	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	+0.4	-1.9	+0.3	+0.1	+0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	+0.3	-1.7	+0.2	+0.1	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	-0.8	+0.3	+0.2	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.6	+1.1	+0.1	+0.2	-0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.1	+1.7	-0.4	+0.0	+0.3
phage	P. simiae Grant Run MOI 0.1	-0.2	+1.2	-0.2	+0.2	+0.6
exudates	RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x	+0.2	+1.7	-0.3	-0.1	+0.1
phage	P. simiae Grant Run MOI 10	+0.6	+1.4	-0.3	-0.1	+0.1
rhizosphere	rhizosphere sample 8; outgrowth in LB	+0.2	+1.5	-0.2	+0.2	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.7	+1.0	+0.6	+0.1	+0.3
agar plate interaction control	Taped volatile agar plate with no fungus	+0.4	+1.7	+0.6	+0.1	-0.1
stress	LB_noSalt with Chloride 1100 mM	+1.0	+1.9	+0.4	+0.4	+0.2