Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_24905	PS417_24915	PS417_24925	PS417_24935	PS417_24945
solid stress	80% Methanol 0.5 mM; solid stress	+0.1	-0.3	-0.4	-5.2	-0.1
liquid stress	Fraxetin 2 mM; liquid stress	+0.0	-0.1	-0.2	-4.7	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.0	+0.1	-0.3	-2.8	-0.1
supernatant control	Vogels_fungal_media 0.1X	-0.3	+0.1	+0.2	-3.8	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.3	+0.2	+0.0	-2.1	+0.0
nophagecontrol	TIme6-nophage	-0.5	+0.1	-0.0	-2.5	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.0	-0.2	-0.5	-1.1	-0.0
solid stress	Fraxetin 0.5 mM; solid stress	-0.1	-0.2	-0.4	-1.9	-0.0
solid stress	Fraxetin 3 mM; solid stress	-0.6	-0.2	+0.0	-1.9	+0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-0.4	+0.4	-0.2	-2.4	+0.2
solid stress	Fraxetin 2 mM; solid stress	-0.4	-0.1	+0.0	-2.2	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.9	+0.3	-0.2	-1.2	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.8	-0.0	-0.4	-1.3	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.3	+0.3	+0.1	-2.2	+0.2
liquid stress	Scopoletin 0.5 mM; liquid stress	+0.3	-0.1	-0.2	-2.0	-0.0
seeds	Growth on radish seeds for 72 hours	-0.1	+0.6	-0.4	-1.5	-0.2
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.4	+0.4	+0.1	-2.2	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	-0.2	+0.0	+0.4	-1.9	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	-0.4	+0.4	+0.3	-1.7	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.1	+0.5	+0.4	-0.9	-0.1
stress	Gentamicin 0.008 mg/ml	-1.6	+0.2	+0.4	+0.6	-0.3
carbon source	L-Valine (C)	-1.0	-0.3	+0.5	+0.8	+0.3
soil	soil sample 4; outgrowth in LB	-1.0	-0.1	+0.2	+1.3	+0.0
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	-0.7	+0.1	+0.6	+1.0	+0.2
phage	P. simiae Grant Run MOI 10	-0.2	-0.2	+0.6	+1.4	-0.3
rhizosphere	rhizosphere sample 8; outgrowth in LB	-0.3	+0.3	+0.2	+1.5	-0.2
phage	Wcs_1	+0.8	-0.2	-0.2	+1.2	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	+0.2	+0.7	+1.0	+0.6
agar plate interaction control	Taped volatile agar plate with no fungus	-0.3	+0.4	+0.4	+1.7	+0.6
stress	LB_noSalt with Chloride 1100 mM	+0.1	+0.6	+1.0	+1.9	+0.4