Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_02475 and PS417_02480 overlap by 1 nucleotidesPS417_02480 and PS417_02485 overlap by 1 nucleotidesPS417_02485 and PS417_02490 are separated by 95 nucleotidesPS417_02490 and PS417_02495 are separated by 12 nucleotides PS417_02475: PS417_02475 - N-acetylmuramoyl-L-alanine amidase, at 565,078 to 566,499 _02475 PS417_02480: PS417_02480 - DNA mismatch repair protein, at 566,499 to 568,415 _02480 PS417_02485: PS417_02485 - tRNA delta(2)-isopentenylpyrophosphate transferase, at 568,415 to 569,386 _02485 PS417_02490: PS417_02490 - RNA-binding protein Hfq, at 569,482 to 569,742 _02490 PS417_02495: PS417_02495 - GTPase HflX, at 569,755 to 571,056 _02495
Group Condition PS417_02475 PS417_02480 PS417_02485 PS417_02490 PS417_02495
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -4.5 -0.2 -4.6 N.D. -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -4.5 -0.4 -3.2 N.D. +0.3
solid stress Fraxetin 2 mM; solid stress -0.9 -0.7 -4.8 N.D. -0.7
stress R2A with Polymyxin B sulfate 0.003 mg/ml -2.0 -0.8 -3.9 N.D. -0.1
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.9 +0.2 -5.6 N.D. +0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.4 -0.6 -4.3 N.D. +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -5.6 -0.5 -0.9 N.D. +0.7
carbon source octanoate (C) -0.9 -1.0 -3.5 N.D. -0.8
stress L-Lysine 60 mM -2.3 -0.7 -2.8 N.D. -0.2
solid stress Fraxetin 3 mM; solid stress -0.8 -1.1 -2.8 N.D. -1.0
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X -1.6 -0.6 -2.5 N.D. -0.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.5 -0.2 -2.3 N.D. -0.4
stress Gentamicin 0.008 mg/ml -1.8 -0.6 -1.1 N.D. -1.8
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.8 -0.7 -4.0 N.D. +0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.9 -0.8 -2.8 N.D. +0.3
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.6 +0.2 -4.6 N.D. -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 -1.1 -2.9 N.D. -0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -1.8 -0.4 -2.7 N.D. -0.3
solid stress Fraxetin 3 mM; solid stress -1.3 -0.9 -1.5 N.D. -1.4
solid stress Fraxetin 3 mM; solid stress -0.6 -0.9 -2.4 N.D. -1.2
stress R2A with Polymyxin B sulfate 0.003 mg/ml -1.3 -0.3 -3.7 N.D. +0.2
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.2 -0.4 -4.3 N.D. +0.1
stress R2A with Polymyxin B sulfate 0.002 mg/ml -1.2 -0.4 -3.3 N.D. +0.7
stress Phosphomycin 0.002 mg/ml +1.7 +1.7 +2.3 N.D. -0.6
stress Phosphomycin 0.001 mg/ml +2.2 +1.9 +2.2 N.D. -0.5
phage Wcs_1 +1.4 +1.8 +2.7 N.D. +0.0
stress Phosphomycin 0.003 mg/ml +2.1 +1.9 +2.6 N.D. -0.5
phage P. simiae OR1 MOI 0.1 +0.9 +1.6 +2.9 N.D. +0.7
carbon source Trisodium citrate (C) +0.8 +2.4 +4.5 N.D. +0.1
carbon source Trisodium citrate (C) +1.1 +2.6 +4.0 N.D. +0.3
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PS417_02475
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PS417_02480
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PS417_02490
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PS417_02495
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