Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_24885	PS417_24890	PS417_24895	PS417_24900	PS417_24905
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	-0.1	-4.2	-0.0	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.7	-0.1	-1.3	-0.0	-0.6
soil	soil sample 2; outgrowth in LB	+0.3	-0.1	-3.4	+0.1	-0.3
stress	LB_noSalt with Chloride 1100 mM	-2.6	+0.2	+0.3	-0.1	+0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.8	+0.6	-2.6	+0.1	-0.4
phage	P. simiae OR1 MOI 0.1	+0.2	+0.5	-2.4	+0.1	+0.3
stress	Gentamicin 0.008 mg/ml	+1.1	-0.8	-0.2	+0.1	-1.6
stress	LB_noSalt with Chloride 1100 mM	-2.7	+0.5	+0.3	+0.4	+0.1
rhizosphere	rhizosphere sample 1; outgrowth in LB	+1.5	-0.7	-1.1	+0.2	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.0	+0.5	+1.2	-0.3	-1.1
stress	methylglyoxal 0.032 vol%	+1.3	+0.5	-2.2	+0.5	-0.0
soil	soil sample 7; outgrowth in LB	+1.8	+0.5	-1.8	-0.0	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+1.2	+0.5	-1.5	+0.1	+0.1
soil	soil sample 4; outgrowth in LB	+2.2	-0.3	-0.0	-0.0	-1.0
stress	Nalidixic 0.025 mg/ml	+1.9	-0.2	-0.9	+0.1	+0.2
stress	Cisplatin 0.01 mg/ml	+2.0	-0.4	+0.5	+0.2	-0.8
soil	soil sample 6; outgrowth in LB	+2.2	-0.3	+0.5	-0.2	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+2.4	+0.1	-1.0	+0.1	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+2.2	-0.3	+0.2	+0.2	-0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.9	-0.5	-0.3	+0.1	+1.7
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+2.7	+0.4	-0.3	+0.1	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+2.5	+0.4	+0.5	-0.1	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+2.7	+0.2	+0.3	-0.0	+0.2
root	root sample 6; outgrowth in LB	+2.4	+0.4	+0.3	+0.2	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+2.7	+0.0	+0.6	+0.4	+0.3
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+4.2	-0.9	+0.9	-0.0	+0.4
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+3.3	+0.4	+0.8	-0.1	+0.2
soil	soil sample 3; outgrowth in LB	+3.8	-0.3	+1.0	+0.3	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+3.0	+0.2	+1.6	+0.1	+0.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.3	+0.4	+5.8	-0.0	+0.2