Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_24840	PS417_24845	PS417_24850	PS417_24855	PS417_24860
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-2.4	N.D.	-0.1	-0.1	-0.5
phage	Wcs_1	-1.8	N.D.	-0.2	+0.1	-0.3
carbon source	Deoxyribonucleic from herring sperm 5 mg/mL (C)	-1.5	N.D.	+0.0	-0.2	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.7	N.D.	-0.2	+0.1	+0.1
carbon source	Ethanol (C)	-1.3	N.D.	-0.1	-0.1	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.9	N.D.	+0.0	-0.1	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	N.D.	+0.3	-0.3	-1.2
stress	methylglyoxal 0.032 vol%	-1.3	N.D.	-0.1	+0.1	-0.1
supernatant control	Vogels_fungal_media 0.1X	-1.7	N.D.	-0.1	+0.1	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.2	N.D.	-0.3	+0.1	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-1.1	N.D.	-0.2	+0.2	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-1.0	N.D.	-0.2	+0.2	-0.3
root	root sample 6; outgrowth in LB	-1.4	N.D.	+0.1	+0.3	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.7	N.D.	-0.1	+0.2	+0.4
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.9	N.D.	-0.5	+0.0	+0.3
no phage control	Time6-nophage	+1.2	N.D.	-0.0	-0.1	-0.4
seeds	Growth on radish seeds for 24 hours	+1.4	N.D.	-0.3	+0.1	-0.3
phage	P. simiae Grant Run MOI 10	+1.2	N.D.	+0.1	+0.2	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+1.3	N.D.	+0.2	+0.2	-0.3
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x	+1.2	N.D.	+0.0	-0.1	+0.4
supernatant	Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x	+1.1	N.D.	+0.1	-0.1	+0.6
agar plate interaction control	Taped volatile agar plate with no fungus	+1.9	N.D.	+0.1	-0.1	-0.1
stress	Choline chloride 300 mM	+1.4	N.D.	-0.1	+0.2	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	+0.9	N.D.	+0.0	-0.0	+1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+1.1	N.D.	+0.2	+0.1	+0.5
phage	JP1 MOI 1	+1.7	N.D.	+0.1	+0.2	-0.0
phage	P. simiae Grant Run MOI 0.1	+1.1	N.D.	+0.4	+0.1	+0.4
stress	Cisplatin 0.01 mg/ml	+1.8	N.D.	-0.1	+0.0	+0.3
seeds	Growth on radish seeds for 72 hours	+2.0	N.D.	+0.0	+0.1	-0.0
seeds	Growth on radish seeds for 72 hours	+2.2	N.D.	+0.0	-0.1	+0.2