Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF4849 and GFF4850 overlap by 4 nucleotidesGFF4850 and GFF4851 overlap by 4 nucleotidesGFF4851 and GFF4852 are separated by 217 nucleotidesGFF4852 and GFF4853 are separated by 25 nucleotides GFF4849 - Conjugative transfer protein TrbB, at 218,804 to 219,841 GFF4849 GFF4850 - CopG domain-containing protein, at 219,838 to 220,302 GFF4850 GFF4851 - Coupling protein VirD4, ATPase required for T-DNA transfer, at 220,299 to 222,317 GFF4851 GFF4852 - Conjugative transfer protein TrbK, at 222,535 to 222,765 GFF4852 GFF4853 - Transcriptional regulator, LysR family, at 222,791 to 223,705 GFF4853
Group Condition GFF4849 GFF4850 GFF4851 GFF4852 GFF4853
complex community Community=arabino-guar; Passage=4 -2.1 N.D. -0.3 N.D. -0.2
complex community Community=Locust bean gum; Passage=4 -0.2 N.D. -0.6 N.D. -0.1
complex community Community=Locust bean gum; Passage=4 -0.6 N.D. -0.1 N.D. -0.0
no phage control no phage control -0.5 N.D. -0.0 N.D. +0.0
complex community Community=guar; Passage=4 +0.3 N.D. -0.3 N.D. -0.3
no phage control no phage control -0.3 N.D. +0.1 N.D. -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.5 N.D. +0.1 N.D. +0.2
phage phage_bap4 -0.2 N.D. +0.2 N.D. -0.2
complex community Community=arabino-guar; Passage=4 +0.5 N.D. -0.4 N.D. -0.1
complex community Community=Locust bean gum; Passage=4 +0.5 N.D. -0.5 N.D. +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.2 N.D. +0.2 N.D. +0.1
vitamin M9 with Supernatant from Cyptococcus -0.2 N.D. +0.2 N.D. +0.2
complex community Community=guar; Passage=4 +0.5 N.D. -0.2 N.D. +0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.2 N.D. +0.3 N.D. +0.3
complex community Community=arabino-guar; Passage=4 +0.6 N.D. -0.4 N.D. +0.1
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.4 N.D. +0.1 N.D. -0.0
vitamin M9 with Supernatant from Cyptococcus +0.2 N.D. +0.1 N.D. +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.2 N.D. +0.3 N.D. +0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.2 N.D. +0.4 N.D. +0.0
vitamin M9 with Supernatant from Cyptococcus +0.5 N.D. +0.1 N.D. +0.0
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.4 N.D. +0.0 N.D. +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.2 N.D. +0.3 N.D. +0.1
complex community Community=arabino-guar; Passage=4 +0.3 N.D. +0.0 N.D. +0.3
complex community Community=Locust bean gum; Passage=4 +1.0 N.D. -0.2 N.D. -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.2 N.D. +0.3 N.D. +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.4 N.D. +0.2 N.D. +0.1
complex community Community=Locust bean gum; Passage=1 +0.3 N.D. +0.5 N.D. -0.0
vitamin M9 with calcium pantothenate 10 mg/mL +0.4 N.D. +0.3 N.D. +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.5 N.D. +0.3 N.D. +0.2
complex community Community=guar; Passage=4 +0.7 N.D. +0.1 N.D. +0.2
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