Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_24795 and PS417_24800 overlap by 4 nucleotidesPS417_24800 and PS417_24805 are separated by 57 nucleotidesPS417_24805 and PS417_24810 are separated by 273 nucleotidesPS417_24810 and PS417_24815 are separated by 157 nucleotides PS417_24795: PS417_24795 - aromatic acid decarboxylase, at 5,376,611 to 5,377,240 _24795 PS417_24800: PS417_24800 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 5,377,237 to 5,378,586 _24800 PS417_24805: PS417_24805 - Fis family transcriptional regulator, at 5,378,644 to 5,380,542 _24805 PS417_24810: PS417_24810 - aldehyde dehydrogenase, at 5,380,816 to 5,382,336 _24810 PS417_24815: PS417_24815 - ethanolamine transporter, at 5,382,494 to 5,383,927 _24815
Group Condition PS417_24795 PS417_24800 PS417_24805 PS417_24810 PS417_24815
solid stress Fraxetin 3 mM; solid stress N.D. -8.6 +0.0 -0.1 +0.1
solid stress Fraxetin 3 mM; solid stress N.D. -7.1 -0.1 -0.4 +0.1
carbon source octanoate (C) N.D. -0.0 -2.9 -3.0 +0.2
soil soil sample 3; outgrowth in LB N.D. -4.7 -0.4 -0.3 -0.1
carbon source octanoate (C) N.D. +0.1 -2.6 -2.6 -0.1
solid stress Fraxetin 3 mM; solid stress N.D. -4.6 -0.2 -0.3 +0.2
root root sample 6; outgrowth in LB N.D. -3.4 -0.3 +0.1 -0.4
solid stress Fraxetin 3 mM; solid stress N.D. -3.6 -0.1 -0.1 -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -3.3 -0.4 -0.0 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. -3.5 +0.1 -0.3 +0.1
stress R2A with Fusaric 120 ug/mL N.D. -3.7 +0.2 -0.0 -0.0
soil soil sample 4; outgrowth in LB N.D. -3.4 +0.1 -0.3 +0.2
stress R2A with Fusaric 120 ug/mL N.D. -3.5 -0.1 +0.0 +0.1
soil soil sample 5; outgrowth in LB N.D. -3.1 +0.1 -0.5 +0.1
stress R2A with Fusaric 120 ug/mL N.D. -3.5 +0.2 +0.1 -0.1
stress R2A with Fusaric 120 ug/mL N.D. -3.2 +0.0 -0.1 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -2.8 -0.3 +0.0 +0.0
carbon source Xylitol (C) N.D. -1.4 -0.7 -1.0 +0.0
soil soil sample 6; outgrowth in LB N.D. -2.2 -0.4 -0.1 -0.1
rhizosphere rhizosphere sample 8; outgrowth in LB N.D. -2.0 -0.6 -0.2 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. -2.9 +0.2 +0.0 +0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -2.4 -0.3 -0.0 +0.1
r2a control with 0.2% methanol R2A control with 0.2% methanol N.D. -2.5 -0.0 -0.0 +0.0
solid stress Fraxetin 2 mM; solid stress N.D. -2.1 -0.2 -0.2 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -2.1 -0.5 +0.1 +0.2
seeds Growth on radish seeds for 72 hours N.D. -2.3 -0.1 +0.3 +0.1
stress R2A with Fusaric 120 ug/mL N.D. -2.6 +0.2 +0.3 +0.1
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X N.D. +2.8 -0.1 -0.1 +0.0
exudates RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x N.D. +2.6 +0.1 +0.0 -0.0
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X N.D. +3.0 -0.1 +0.0 +0.1
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PS417_24795
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PS417_24800
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PS417_24810
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