Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF4847 and GFF4848 overlap by 4 nucleotidesGFF4848 and GFF4849 overlap by 4 nucleotidesGFF4849 and GFF4850 overlap by 4 nucleotidesGFF4850 and GFF4851 overlap by 4 nucleotides GFF4847 - Conjugative transfer protein TrbD, at 218,134 to 218,418 GFF4847 GFF4848 - Conjugative transfer protein TrbC, at 218,415 to 218,807 GFF4848 GFF4849 - Conjugative transfer protein TrbB, at 218,804 to 219,841 GFF4849 GFF4850 - CopG domain-containing protein, at 219,838 to 220,302 GFF4850 GFF4851 - Coupling protein VirD4, ATPase required for T-DNA transfer, at 220,299 to 222,317 GFF4851
Group Condition GFF4847 GFF4848 GFF4849 GFF4850 GFF4851
complex community Community=arabino-guar; Passage=4 -3.5 N.D. +0.3 N.D. +0.0
complex community Community=Locust bean gum; Passage=4 -1.6 N.D. -0.6 N.D. -0.1
complex community Community=arabino-guar; Passage=4 +0.6 N.D. -2.1 N.D. -0.3
complex community Community=arabino-guar; Passage=4 -1.3 N.D. +0.5 N.D. -0.4
vitamin M9 with Supernatant from Cyptococcus -1.1 N.D. -0.2 N.D. +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -1.5 N.D. +0.2 N.D. +0.3
no phage control no phage control -0.4 N.D. -0.5 N.D. -0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.6 N.D. -0.2 N.D. +0.3
complex community Community=Locust bean gum; Passage=4 -0.5 N.D. +0.5 N.D. -0.5
phage phage_bap4 -0.6 N.D. +0.2 N.D. -0.0
complex community Community=Locust bean gum; Passage=4 +0.5 N.D. -0.2 N.D. -0.6
complex community Community=guar; Passage=4 -1.0 N.D. +0.7 N.D. +0.1
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.4 N.D. +0.4 N.D. +0.0
complex community Community=arabino-guar; Passage=4 -0.2 N.D. +0.6 N.D. -0.4
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.4 N.D. +0.4 N.D. +0.2
no phage control no phage control +0.5 N.D. -0.3 N.D. +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.8 N.D. -0.5 N.D. +0.1
complex community Community=Kojac gum; Passage=1 +0.4 N.D. -0.1 N.D. +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.4 N.D. +0.5 N.D. +0.3
phage phage_bap4 +0.5 N.D. -0.2 N.D. +0.2
phage phage_bap4 +0.6 N.D. -0.2 N.D. +0.1
complex community Community=Locust bean gum; Passage=1 -0.3 N.D. +0.3 N.D. +0.5
vitamin M9 with Supernatant from Cyptococcus +0.6 N.D. -0.1 N.D. +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.5 N.D. +0.1 N.D. +0.2
complex community Community=guar; Passage=4 +0.9 N.D. +0.3 N.D. -0.3
vitamin M9 with calcium pantothenate 10 mg/mL +0.5 N.D. +0.1 N.D. +0.2
vitamin M9 with calcium pantothenate 10 mg/mL +0.2 N.D. +0.4 N.D. +0.3
complex community Community=Kojac gum; Passage=4 +0.7 N.D. +0.3 N.D. -0.1
vitamin M9 with Supernatant from Cyptococcus +0.7 N.D. +0.2 N.D. +0.1
complex community Community=Locust bean gum; Passage=4 +0.7 N.D. +1.0 N.D. -0.2
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