Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_24750 and PS417_24755 are separated by 145 nucleotidesPS417_24755 and PS417_24760 overlap by 4 nucleotidesPS417_24760 and PS417_24765 are separated by 21 nucleotidesPS417_24765 and PS417_24770 overlap by 4 nucleotides PS417_24750: PS417_24750 - 3-methyladenine DNA glycosylase, at 5,369,247 to 5,369,930 _24750 PS417_24755: PS417_24755 - phosphoesterase, at 5,370,076 to 5,371,392 _24755 PS417_24760: PS417_24760 - ATP-dependent protease, at 5,371,389 to 5,371,979 _24760 PS417_24765: PS417_24765 - membrane protein, at 5,372,001 to 5,372,717 _24765 PS417_24770: PS417_24770 - murein hydrolase transporter LrgA, at 5,372,714 to 5,373,067 _24770
Group Condition PS417_24750 PS417_24755 PS417_24760 PS417_24765 PS417_24770
carbon source L-Leucine (C) +0.0 -0.2 N.D. -6.2 N.D.
carbon source Gly-Glu (C) +0.0 -0.0 N.D. -5.1 N.D.
carbon source Gly-Glu (C) -0.1 +0.1 N.D. -4.5 N.D.
carbon source L-Leucine (C) -0.1 -0.1 N.D. -4.1 N.D.
carbon source NAG (C) +0.0 +0.1 N.D. -3.5 N.D.
carbon source NAG (C) -0.2 -0.2 N.D. -2.8 N.D.
carbon source octanoate (C) -0.2 +0.2 N.D. -3.0 N.D.
carbon source octanoate (C) -0.3 +0.1 N.D. -2.4 N.D.
carbon source D-Lactate (C) +0.0 -0.1 N.D. -2.5 N.D.
carbon source D-Lactate (C) -0.1 +0.0 N.D. -2.3 N.D.
carbon source Carbon source L-Citrulline 10 mM -0.2 -0.2 N.D. -1.9 N.D.
carbon source D-Sorbitol (C) +0.0 -0.1 N.D. -2.2 N.D.
carbon source L-Isoleucine (C) -0.0 -0.2 N.D. -2.0 N.D.
carbon source L-Valine (C) -0.1 -0.4 N.D. -1.6 N.D.
carbon source acetate (C) -0.1 -0.2 N.D. -1.8 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 -0.9 N.D. -0.7 N.D.
carbon source Fumarate (C) -0.2 -0.1 N.D. -1.7 N.D.
carbon source D-Glucose-6-Phosphate (C) +0.1 -0.0 N.D. -2.0 N.D.
carbon source L-Histidine (C) -0.1 +0.1 N.D. -1.8 N.D.
carbon source Ethanol (C) -0.0 -0.3 N.D. -1.5 N.D.
carbon source L-Histidine (C) -0.2 -0.3 N.D. -1.3 N.D.
carbon source acetate (C) +0.0 -0.2 N.D. -1.6 N.D.
carbon source D-Trehalose (C) -0.0 -0.0 N.D. -1.7 N.D.
solid stress Fraxetin 3 mM; solid stress +0.1 -0.2 N.D. -1.5 N.D.
rhizosphere rhizosphere sample 2; outgrowth in LB +0.0 -0.3 N.D. -1.3 N.D.
seeds Growth on radish seeds for 72 hours +0.2 +0.2 N.D. -2.0 N.D.
carbon source Carbon source L-Citrulline 10 mM -0.0 +0.1 N.D. -1.6 N.D.
carbon source Carbon source L-Citrulline 5 mM +0.1 -0.2 N.D. -1.4 N.D.
carbon source Ethanol (C) +0.0 +0.1 N.D. -1.6 N.D.
carbon source Carbon source L-Citrulline 5 mM -0.0 +0.1 N.D. -1.6 N.D.
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