Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_24735 and PS417_24740 are separated by 69 nucleotidesPS417_24740 and PS417_24745 overlap by 1 nucleotidesPS417_24745 and PS417_24750 are separated by 174 nucleotidesPS417_24750 and PS417_24755 are separated by 145 nucleotides PS417_24735: PS417_24735 - ribosome-associated protein IOJAP, at 5,366,599 to 5,367,093 _24735 PS417_24740: PS417_24740 - nicotinate-nucleotide adenylyltransferase, at 5,367,163 to 5,367,807 _24740 PS417_24745: PS417_24745 - gamma-glutamyl phosphate reductase, at 5,367,807 to 5,369,072 _24745 PS417_24750: PS417_24750 - 3-methyladenine DNA glycosylase, at 5,369,247 to 5,369,930 _24750 PS417_24755: PS417_24755 - phosphoesterase, at 5,370,076 to 5,371,392 _24755
Group Condition PS417_24735 PS417_24740 PS417_24745 PS417_24750 PS417_24755
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X N.D. N.D. -6.7 +0.3 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. -6.7 +0.2 +0.1
supernatant control Vogels_fungal_media; pH 5.5 N.D. N.D. -6.3 +0.1 +0.0
carbon source NAG (C) N.D. N.D. -5.8 -0.2 -0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. -6.3 +0.3 -0.0
carbon source L-Tryptophan (C) N.D. N.D. -5.9 -0.0 -0.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X N.D. N.D. -5.8 +0.1 -0.2
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x N.D. N.D. -5.8 -0.0 -0.1
agar plate interaction control Taped volatile agar plate with no fungus N.D. N.D. -5.5 +0.1 -0.5
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X N.D. N.D. -5.8 +0.1 -0.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB N.D. N.D. -6.1 +0.3 +0.0
carbon source D-Galactose (C) N.D. N.D. -5.6 +0.0 -0.2
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X N.D. N.D. -6.2 +0.2 +0.2
carbon source Cytidine (C) N.D. N.D. -5.6 -0.0 -0.1
supernatant control Vogels_fungal_media; pH 5.5 N.D. N.D. -6.0 +0.1 +0.2
carbon source L-Lactate (C) N.D. N.D. -5.8 -0.1 +0.2
nitrogen source nitrate (N) N.D. N.D. -5.7 +0.0 +0.0
carbon source D-Mannose (C) N.D. N.D. -5.4 -0.1 -0.1
carbon source L-Valine (C) N.D. N.D. -5.1 -0.1 -0.4
carbon source L-Asparagine (C) N.D. N.D. -5.3 -0.0 -0.3
carbon source Cytidine (C) N.D. N.D. -5.6 -0.0 +0.0
carbon source L-Leucine (C) N.D. N.D. -5.4 +0.0 -0.2
nitrogen source Urea (N) N.D. N.D. -5.5 -0.2 +0.2
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x N.D. N.D. -5.6 +0.1 -0.1
carbon source Putrescine (C) N.D. N.D. -5.7 +0.1 +0.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB N.D. N.D. -5.8 +0.3 -0.0
carbon source L-Asparagine (C) N.D. N.D. -5.6 +0.0 +0.1
carbon source D-Mannose (C) N.D. N.D. -5.4 -0.2 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. -4.9 +0.2 -0.7
carbon source D-Sorbitol (C) N.D. N.D. -5.5 +0.0 +0.1
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