Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_24715 and PS417_24720 are separated by 17 nucleotidesPS417_24720 and PS417_24725 overlap by 11 nucleotidesPS417_24725 and PS417_24730 are separated by 15 nucleotidesPS417_24730 and PS417_24735 are separated by 9 nucleotides PS417_24715: PS417_24715 - lytic transglycosylase, at 5,362,045 to 5,363,055 _24715 PS417_24720: PS417_24720 - rod shape-determining protein RodA, at 5,363,073 to 5,364,218 _24720 PS417_24725: PS417_24725 - penicillin-binding protein 2, at 5,364,208 to 5,366,106 _24725 PS417_24730: PS417_24730 - 50S rRNA methyltransferase, at 5,366,122 to 5,366,589 _24730 PS417_24735: PS417_24735 - ribosome-associated protein IOJAP, at 5,366,599 to 5,367,093 _24735
Group Condition PS417_24715 PS417_24720 PS417_24725 PS417_24730 PS417_24735
stress Neomycin 0.04 mg/ml -1.8 N.D. N.D. N.D. N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml -1.0 N.D. N.D. N.D. N.D.
stress L-Lysine 60 mM -0.9 N.D. N.D. N.D. N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.8 N.D. N.D. N.D. N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.8 N.D. N.D. N.D. N.D.
stress Polymyxin B sulfate 0.006 mg/ml -0.7 N.D. N.D. N.D. N.D.
carbon source L-Valine (C) -0.7 N.D. N.D. N.D. N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.7 N.D. N.D. N.D. N.D.
agar plate interaction control Taped volatile agar plate with no fungus -0.7 N.D. N.D. N.D. N.D.
phage P. simiae ORA MOI 1 -0.6 N.D. N.D. N.D. N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.6 N.D. N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.6 N.D. N.D. N.D. N.D.
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.6 N.D. N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.6 N.D. N.D. N.D. N.D.
solid stress Fraxetin 3 mM; solid stress +0.7 N.D. N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.7 N.D. N.D. N.D. N.D.
phage P. simiae OR Antrim MOI 10 +0.7 N.D. N.D. N.D. N.D.
solid stress Fraxetin 3 mM; solid stress +0.7 N.D. N.D. N.D. N.D.
phage P. simiae Grant Run MOI 0.1 +0.7 N.D. N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.7 N.D. N.D. N.D. N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.7 N.D. N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.7 N.D. N.D. N.D. N.D.
phage P. simiae OR Antrim MOI 0.1 +0.8 N.D. N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.8 N.D. N.D. N.D. N.D.
phage JP1 MOI 1 +0.8 N.D. N.D. N.D. N.D.
phage P. simiae OR Antrim MOI 10 +0.9 N.D. N.D. N.D. N.D.
stress 1-ethyl-3-methylimidazolium acetate 35 mM +0.9 N.D. N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.9 N.D. N.D. N.D. N.D.
phage JP1 MOI 0.1 +1.0 N.D. N.D. N.D. N.D.
stress 1-ethyl-3-methylimidazolium chloride 200 mM +1.0 N.D. N.D. N.D. N.D.
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