Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_24705 and PS417_24710 are separated by 180 nucleotidesPS417_24710 and PS417_24715 overlap by 1 nucleotidesPS417_24715 and PS417_24720 are separated by 17 nucleotidesPS417_24720 and PS417_24725 overlap by 11 nucleotides PS417_24705: PS417_24705 - D-alanyl-D-alanine carboxypeptidase, at 5,359,703 to 5,360,860 _24705 PS417_24710: PS417_24710 - lipoprotein, at 5,361,041 to 5,362,045 _24710 PS417_24715: PS417_24715 - lytic transglycosylase, at 5,362,045 to 5,363,055 _24715 PS417_24720: PS417_24720 - rod shape-determining protein RodA, at 5,363,073 to 5,364,218 _24720 PS417_24725: PS417_24725 - penicillin-binding protein 2, at 5,364,208 to 5,366,106 _24725
Group Condition PS417_24705 PS417_24710 PS417_24715 PS417_24720 PS417_24725
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -3.1 -8.4 +0.6 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.1 -8.4 +0.5 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -4.1 -5.1 +0.4 N.D. N.D.
motility outer cut, LB soft agar motility assay -5.4 -3.0 +0.4 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 -8.5 +0.8 N.D. N.D.
motility outer cut, LB soft agar motility assay -5.5 -2.2 +0.0 N.D. N.D.
soil soil sample 7; outgrowth in LB -4.5 -3.1 -0.1 N.D. N.D.
soil soil sample 4; outgrowth in LB -2.0 -5.6 +0.2 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -5.2 -2.7 +0.7 N.D. N.D.
supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x -7.2 -0.3 +0.3 N.D. N.D.
motility inner cut, LB soft agar motility assay -5.1 -1.9 -0.1 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.5 -4.6 +0.2 N.D. N.D.
motility inner cut, LB soft agar motility assay -4.2 -2.4 -0.1 N.D. N.D.
motility outer cut, LB soft agar motility assay -3.9 -3.0 +0.2 N.D. N.D.
motility outer cut, LB soft agar motility assay -3.8 -2.5 +0.1 N.D. N.D.
seeds Growth on radish seeds for 24 hours -0.8 -5.3 -0.1 N.D. N.D.
stress L-Lysine 60 mM -3.0 -2.3 -0.9 N.D. N.D.
phage Wcs_1 -4.7 -1.1 -0.4 N.D. N.D.
soil soil sample 2; outgrowth in LB -3.0 -3.2 +0.2 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -2.0 -4.4 +0.5 N.D. N.D.
soil soil sample 6; outgrowth in LB -2.0 -3.7 +0.1 N.D. N.D.
soil soil sample 3; outgrowth in LB -1.3 -4.2 -0.1 N.D. N.D.
solid stress Fraxetin 3 mM; solid stress -5.1 -0.9 +0.7 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.1 -3.6 +0.9 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.5 -3.7 +0.7 N.D. N.D.
stress LB_noSalt with Chloride 1100 mM -5.3 +1.1 +0.1 N.D. N.D.
stress Cisplatin 0.01 mg/ml -6.3 +1.7 +0.6 N.D. N.D.
seeds Growth on radish seeds for 72 hours +0.8 -4.5 -0.3 N.D. N.D.
phage P. simiae OR Antrim MOI 10 -4.8 +0.3 +0.9 N.D. N.D.
phage P. simiae OR Antrim MOI 0.1 -5.0 +0.7 +0.8 N.D. N.D.
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PS417_24705
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PS417_24710
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PS417_24720
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