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Cofit
Protein
Homologs
Fitness for 5 genes in
Sphingobium sp. HT1-2
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Top 18 experiments (either direction), sorted by average fitness
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500 nt
GFF4828 and GFF4829 overlap by 8 nucleotides
GFF4829 and GFF4830 are separated by 80 nucleotides
GFF4830 and GFF4831 are separated by 207 nucleotides
GFF4831 and GFF4832 are separated by 394 nucleotides
GFF4828 - IncQ plasmid conjugative transfer DNA nicking endonuclease TraR (pTi VirD2 homolog), at 4,813,227 to 4,814,333
GFF4828
GFF4829 - hypothetical protein, at 4,814,326 to 4,814,862
GFF4829
GFF4830 - Mobile element protein, at 4,814,943 to 4,816,169
GFF4830
GFF4831 - Transposase, at 4,816,377 to 4,816,751
GFF4831
GFF4832 - hypothetical protein, at 4,817,146 to 4,817,277
GFF4832
Group
Condition
GFF4828
GFF4829
GFF4830
GFF4831
GFF4832
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.2
+0.2
+0.2
+0.1
-0.3
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.1
+0.1
+0.1
+0.2
+0.5
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.2
+0.3
+0.0
+0.3
+0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.1
+0.6
+0.2
+0.4
+0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.2
+0.4
+0.3
+0.1
+0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.2
+0.6
+0.4
-0.3
+0.4
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.2
+0.1
+0.2
+0.4
+0.4
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.1
+0.4
+0.2
+0.3
+0.4
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.3
+0.2
+0.2
+0.1
+0.6
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.3
+0.5
+0.2
+0.2
+0.2
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.2
+0.3
+0.2
+0.5
+0.3
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.2
+0.6
+0.3
+0.3
+0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.3
+0.2
+0.4
+0.2
+0.4
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.3
+0.3
+0.2
+0.3
+0.6
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.3
+0.5
+0.2
+0.4
+0.4
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.3
+0.3
+0.3
+0.4
+0.5
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.3
+0.6
+0.2
+0.3
+0.5
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.3
+0.6
+0.3
+0.4
+0.5
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