Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_24655 and PS417_24660 are separated by 262 nucleotidesPS417_24660 and PS417_24665 are separated by 88 nucleotidesPS417_24665 and PS417_24670 are separated by 39 nucleotidesPS417_24670 and PS417_24675 are separated by 228 nucleotides PS417_24655: PS417_24655 - hypothetical protein, at 5,349,724 to 5,350,041 _24655 PS417_24660: PS417_24660 - leucine--tRNA ligase, at 5,350,304 to 5,352,910 _24660 PS417_24665: PS417_24665 - lipoprotein, at 5,352,999 to 5,353,604 _24665 PS417_24670: PS417_24670 - DNA polymerase III subunit delta, at 5,353,644 to 5,354,681 _24670 PS417_24675: PS417_24675 - lipoyl synthase, at 5,354,910 to 5,355,074 _24675
Group Condition PS417_24655 PS417_24660 PS417_24665 PS417_24670 PS417_24675
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 N.D. N.D. N.D. -5.5
root root sample 6; outgrowth in LB -2.8 N.D. N.D. N.D. -0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 N.D. N.D. N.D. -2.4
phage JP1 MOI 10 -0.6 N.D. N.D. N.D. -1.9
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.6 N.D. N.D. N.D. -1.6
carbon source 2'-Deoxyinosine 5 mM (C) -3.7 N.D. N.D. N.D. +1.6
rhizosphere rhizosphere sample 2; outgrowth in LB -1.9 N.D. N.D. N.D. -0.2
carbon source 2'-Deoxyinosine 5 mM (C) -2.6 N.D. N.D. N.D. +0.7
phage P. simiae OR Antrim MOI 1 -0.1 N.D. N.D. N.D. -1.7
soil soil sample 3; outgrowth in LB -1.7 N.D. N.D. N.D. +0.0
phage P. simiae OR Antrim MOI 0.1 -1.0 N.D. N.D. N.D. -0.7
soil soil sample 5; outgrowth in LB -1.4 N.D. N.D. N.D. +0.3
liquid stress 80% Methanol 0.5 mM; liquid stress +0.5 N.D. N.D. N.D. -1.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.4 N.D. N.D. N.D. -1.4
solid stress Fraxetin 2 mM; solid stress +0.4 N.D. N.D. N.D. -1.2
liquid stress Fraxetin 1 mM; liquid stress +0.5 N.D. N.D. N.D. -1.1
solid stress Fraxetin 3 mM; solid stress +0.7 N.D. N.D. N.D. -1.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.6 N.D. N.D. N.D. -0.9
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.7 N.D. N.D. N.D. -0.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.3 N.D. N.D. N.D. +1.4
soil soil sample 8; outgrowth in LB -1.3 N.D. N.D. N.D. +1.5
soil soil sample 4; outgrowth in LB -0.9 N.D. N.D. N.D. +1.4
phage P. simiae Grant Run MOI 10 -0.6 N.D. N.D. N.D. +1.1
phage P. simiae OR1 MOI 0.1 -0.5 N.D. N.D. N.D. +1.5
stress methylglyoxal 0.032 vol% -0.3 N.D. N.D. N.D. +1.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 N.D. N.D. N.D. +1.5
phage P. simiae Grant Run MOI 10 -0.1 N.D. N.D. N.D. +1.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 N.D. N.D. N.D. +1.4
stress Choline chloride 300 mM +0.3 N.D. N.D. N.D. +1.5
carbon source L-Valine (C) +0.5 N.D. N.D. N.D. +1.4
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PS417_24655
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PS417_24660
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PS417_24670
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