Fitness for 5 genes in Pseudomonas simiae WCS417

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 554 experiments or choose conditions or try the comparative fitness browser

500 ntPS417_24645 and PS417_24650 are separated by 126 nucleotidesPS417_24650 and PS417_24655 are separated by 99 nucleotidesPS417_24655 and PS417_24660 are separated by 262 nucleotidesPS417_24660 and PS417_24665 are separated by 88 nucleotides PS417_24645: PS417_24645 - acyltransferase, at 5,347,213 to 5,348,736 _24645 PS417_24650: PS417_24650 - membrane protein, at 5,348,863 to 5,349,624 _24650 PS417_24655: PS417_24655 - hypothetical protein, at 5,349,724 to 5,350,041 _24655 PS417_24660: PS417_24660 - leucine--tRNA ligase, at 5,350,304 to 5,352,910 _24660 PS417_24665: PS417_24665 - lipoprotein, at 5,352,999 to 5,353,604 _24665
Group Condition PS417_24645 PS417_24650 PS417_24655 PS417_24660 PS417_24665
root root sample 6; outgrowth in LB N.D. -0.8 -2.8 N.D. N.D.
carbon source 2'-Deoxyinosine 5 mM (C) N.D. -0.6 -2.6 N.D. N.D.
carbon source 2'-Deoxyinosine 5 mM (C) N.D. +0.9 -3.7 N.D. N.D.
soil soil sample 3; outgrowth in LB N.D. -0.9 -1.7 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -2.0 -0.5 N.D. N.D.
soil soil sample 8; outgrowth in LB N.D. -0.6 -1.3 N.D. N.D.
phage P. simiae ORA MOI 0.1 N.D. -1.8 +0.2 N.D. N.D.
phage P. simiae OR Antrim MOI 1 N.D. -1.4 -0.1 N.D. N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. -2.0 +0.5 N.D. N.D.
seeds Growth on radish seeds for 72 hours N.D. -1.3 -0.1 N.D. N.D.
motility inner cut, LB soft agar motility assay N.D. -1.4 -0.1 N.D. N.D.
soil soil sample 6; outgrowth in LB N.D. -0.5 -0.9 N.D. N.D.
phage P. simiae OR1 MOI 0.1 N.D. -0.9 -0.5 N.D. N.D.
soil soil sample 4; outgrowth in LB N.D. -0.5 -0.9 N.D. N.D.
phage P. simiae Grant Run MOI 0.1 N.D. -0.9 -0.4 N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X N.D. -0.8 -0.6 N.D. N.D.
soil soil sample 2; outgrowth in LB N.D. -0.8 -0.5 N.D. N.D.
rhizosphere rhizosphere sample 2; outgrowth in LB N.D. +0.6 -1.9 N.D. N.D.
carbon source L-Valine (C) N.D. -1.7 +0.5 N.D. N.D.
phage JP1 MOI 1 N.D. -1.3 +0.2 N.D. N.D.
solid stress Fraxetin 3 mM; solid stress N.D. -1.3 +0.2 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.5 +0.6 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. -1.1 +0.3 N.D. N.D.
soil soil sample 5; outgrowth in LB N.D. +0.6 -1.4 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.7 -1.3 N.D. N.D.
carbon source Carbon source D-Mannitol 5 mM N.D. +1.0 -0.3 N.D. N.D.
liquid stress 80% Methanol 3 mM; liquid stress N.D. +0.8 +0.5 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. +1.8 -0.4 N.D. N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. +1.2 +0.7 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. +2.5 -0.3 N.D. N.D.
remove
PS417_24645
plot		 remove
PS417_24650
plot		 remove
PS417_24655		 remove
PS417_24660
plot		 remove
PS417_24665
plot