Fitness for 5 genes in Pseudomonas simiae WCS417

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 554 experiments or choose conditions or try the comparative fitness browser

500 ntPS417_24625 and PS417_24630 are separated by 230 nucleotidesPS417_24630 and PS417_24635 overlap by 8 nucleotidesPS417_24635 and PS417_24640 are separated by 41 nucleotidesPS417_24640 and PS417_24645 are separated by 8 nucleotides PS417_24625: PS417_24625 - (dimethylallyl)adenosine tRNA methylthiotransferase, at 5,343,309 to 5,344,637 _24625 PS417_24630: PS417_24630 - ATP-binding protein, at 5,344,868 to 5,345,872 _24630 PS417_24635: PS417_24635 - rRNA maturation factor, at 5,345,865 to 5,346,323 _24635 PS417_24640: PS417_24640 - magnesium transporter, at 5,346,365 to 5,347,204 _24640 PS417_24645: PS417_24645 - acyltransferase, at 5,347,213 to 5,348,736 _24645
Group Condition PS417_24625 PS417_24630 PS417_24635 PS417_24640 PS417_24645
stress Cisplatin 0.01 mg/ml +0.1 -2.3 N.D. N.D. N.D.
stress methylglyoxal 0.032 vol% -0.7 -1.1 N.D. N.D. N.D.
soil soil sample 3; outgrowth in LB -0.9 -0.9 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 -1.0 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6 -0.9 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 -1.4 N.D. N.D. N.D.
solid stress Fraxetin 2 mM; solid stress -0.6 -0.8 N.D. N.D. N.D.
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.9 -0.4 N.D. N.D. N.D.
motility outer cut, LB soft agar motility assay -0.7 -0.5 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.4 -0.8 N.D. N.D. N.D.
carbon source Carbon source L-Citrulline 5 mM -0.4 -0.8 N.D. N.D. N.D.
solid stress Fraxetin 3 mM; solid stress -0.6 -0.5 N.D. N.D. N.D.
phage P. simiae Grant Run MOI 0.1 +0.1 -1.2 N.D. N.D. N.D.
soil soil sample 7; outgrowth in LB -1.1 +0.2 N.D. N.D. N.D.
carbon source Carbon source L-Ornithine 10 mM +0.1 -1.0 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 -1.0 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.3 -1.0 N.D. N.D. N.D.
carbon source L-Valine (C) +0.3 -0.9 N.D. N.D. N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.7 +0.4 N.D. N.D. N.D.
phage P. simiae OR1 MOI 0.1 -0.7 +0.4 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -0.9 +0.7 N.D. N.D. N.D.
stress Gentamicin 0.008 mg/ml +0.9 -1.1 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days -0.6 +0.5 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.8 -0.3 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 +1.1 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.6 +1.6 N.D. N.D. N.D.
phage JP1 MOI 10 +0.3 +1.0 N.D. N.D. N.D.
nophagecontrol Only library +0.2 +1.2 N.D. N.D. N.D.
nitrogen source Adenine (N) +0.8 +0.7 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +1.2 N.D. N.D. N.D.
remove
PS417_24625
plot		 remove
PS417_24630
plot		 remove
PS417_24635		 remove
PS417_24640
plot		 remove
PS417_24645
plot