Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_24525 and PS417_24530 are separated by 117 nucleotidesPS417_24530 and PS417_24535 are separated by 176 nucleotidesPS417_24535 and PS417_24540 are separated by 40 nucleotidesPS417_24540 and PS417_24545 are separated by 18 nucleotides PS417_24525: PS417_24525 - nuclease, at 5,321,589 to 5,322,065 _24525 PS417_24530: PS417_24530 - ABC transporter substrate-binding protein, at 5,322,183 to 5,322,914 _24530 PS417_24535: PS417_24535 - membrane protein, at 5,323,091 to 5,323,750 _24535 PS417_24540: PS417_24540 - endonuclease, at 5,323,791 to 5,324,879 _24540 PS417_24545: PS417_24545 - isomerase, at 5,324,898 to 5,325,650 _24545
Group Condition PS417_24525 PS417_24530 PS417_24535 PS417_24540 PS417_24545
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.1 -0.3 -3.1 -0.1 +0.0
agar plate interaction control Taped volatile agar plate with no fungus -2.3 -1.2 -1.0 +0.3 +0.2
phage P. simiae ORA MOI 10 -0.5 +0.1 -2.7 +0.3 -0.2
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X -0.3 -2.8 -0.1 +0.0 +0.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X -0.5 -2.0 -0.3 +0.1 +0.0
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.0 -0.7 -0.7 -0.2 -0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.1 -0.1 -0.7 -0.6 -0.1
supernatant control Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB -1.9 +0.2 -0.6 -0.1 +0.1
rhizosphere rhizosphere sample 2; outgrowth in LB -2.1 +0.3 -0.2 -0.3 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.3 -0.1 +0.3 +0.1 -0.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X -0.6 -2.1 +0.5 +0.2 +0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 -0.8 -1.8 +0.2 +0.1
stress R2A with Polymyxin B sulfate 0.002 mg/ml -1.7 -0.3 -0.3 +0.4 -0.3
rhizosphere rhizosphere sample 8; outgrowth in LB -2.1 +0.2 -0.3 +0.0 +0.1
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x -1.0 -0.1 -0.9 +0.5 -0.2
stress R2A with Polymyxin B sulfate 0.003 mg/ml -2.1 +0.4 -0.4 +0.3 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.4 -0.7 +0.1 +0.5 +0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 -1.0 -1.2 +0.4 -0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -1.6 -0.4 +0.2 +0.5 +0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.7 +0.2 -0.3 +0.4 +0.1
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.7 +0.9 -0.9 -0.5 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.0 +0.5 -0.8 +0.3 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -1.5 +0.3 +0.4 -0.0 +0.4
stress R2A with Polymyxin B sulfate 0.003 mg/ml -1.1 -0.4 +1.1 -0.1 +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -1.1 +0.8 -0.5 +0.7 +0.2
carbon source L-Valine (C) -0.7 -0.4 +1.3 -0.3 +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days -0.2 -1.0 +0.3 +1.2 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.8 -0.3 +1.2 +0.7 -0.2
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.2 -0.3 +2.8 -0.1 +0.0
seeds Growth on radish seeds for 72 hours +2.1 -0.5 +0.7 +0.7 +0.1
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