Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 552 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_24505	PS417_24510	PS417_24515	PS417_24520	PS417_24525
supernatant control	Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB	+0.0	-0.3	N.D.	-0.7	-1.9
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.1	+0.0	N.D.	-0.5	-2.1
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-2.6	+0.2	N.D.	+0.5	-0.5
rhizosphere	rhizosphere sample 8; outgrowth in LB	+0.1	+0.1	N.D.	-0.4	-2.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	+0.1	N.D.	-0.1	-2.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.2	-0.2	N.D.	+0.3	-2.1
carbon source	2'-Deoxyinosine 5 mM (C)	-0.0	-0.7	N.D.	-0.0	-1.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.1	-0.5	N.D.	-0.3	-1.1
r2a control with 0.2x vogels	R2A control with 0.2X Vogels	-0.0	-0.0	N.D.	-0.1	-1.8
phage	P. simiae ORA MOI 0.1	-0.0	-0.4	N.D.	-0.2	-1.4
agar plate interaction control	Taped volatile agar plate with no fungus	+0.0	-0.1	N.D.	+0.5	-2.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	-0.0	-0.3	N.D.	+0.3	-1.4
liquid stress	Fraxetin 2 mM; liquid stress	+0.0	+0.1	N.D.	+0.2	-1.7
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.1	+0.1	N.D.	+0.2	-1.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.3	-0.1	N.D.	+0.2	-1.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	+0.4	N.D.	+0.1	-1.4
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.1	+0.4	N.D.	+0.3	-1.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	+0.2	N.D.	+0.5	-1.7
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	+0.7	N.D.	-0.7	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.2	N.D.	+0.8	-1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.2	+0.5	N.D.	+0.7	-1.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	+1.1	N.D.	-0.7	-0.0
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.2	-0.6	N.D.	+1.2	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	+0.3	N.D.	+0.8	-1.0
phage	JP1 MOI 0.1	+0.2	-0.9	N.D.	+0.5	+0.7
seeds	Growth on radish seeds for 24 hours	+0.3	+0.5	N.D.	-0.7	+0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.1	+0.9	N.D.	-0.5	+0.7
stress	methylglyoxal 0.032 vol%	+0.0	+0.3	N.D.	+1.3	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.2	+0.1	N.D.	+1.1	+0.9
seeds	Growth on radish seeds for 72 hours	+0.4	+0.8	N.D.	+0.4	+2.1