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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF4790 and GFF4791 are separated by 5 nucleotides
GFF4791 and GFF4792 overlap by 4 nucleotides
GFF4792 and GFF4793 are separated by 168 nucleotides
GFF4793 and GFF4794 are separated by 4 nucleotides
GFF4790 - Nudix-related transcriptional regulator NrtR, at 160,668 to 161,393
GFF4790
GFF4791 - RNA polymerase ECF-type sigma factor, at 161,399 to 162,634
GFF4791
GFF4792 - PhnB protein, at 162,631 to 162,993
GFF4792
GFF4793 - Homoserine dehydrogenase (EC 1.1.1.3), at 163,162 to 164,523
GFF4793
GFF4794 - Ectoine hydroxylase (EC 1.17.-.-), at 164,528 to 165,403
GFF4794
Group
Condition
GFF4790
GFF4791
GFF4792
GFF4793
GFF4794
complex community
Community=guar; Passage=4
-1.1
-0.2
-3.6
+0.1
+0.2
complex community
Community=arabino-guar; Passage=4
-0.8
-0.0
-1.6
-0.0
-0.3
complex community
Community=arabino-guar; Passage=4
-0.8
-0.1
-2.2
+0.1
+0.1
phage
phage_bap4
-3.1
-0.0
+0.6
-0.2
+0.1
phage
phage_bap4
-2.7
-0.0
+0.5
-0.1
-0.1
complex community
Community=guar; Passage=4
-1.3
-0.7
-0.6
-0.1
+0.3
phage
phage_bap4
-2.5
-0.1
+0.0
+0.1
+0.0
phage
phage_bap4
-2.4
-0.1
+0.0
-0.0
+0.2
complex community
Community=guar; Passage=4
-1.4
-0.0
-1.0
+0.2
-0.1
complex community
Community=guar; Passage=4
-1.6
+0.2
-0.9
-0.0
+0.4
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-1.4
+0.2
-0.8
+0.1
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.9
+0.1
-0.8
+0.1
-0.1
complex community
Community=Locust bean gum; Passage=4
-1.4
+0.2
-0.3
-0.0
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL
-1.0
+0.1
-0.7
+0.1
+0.1
complex community
Community=Kojac gum; Passage=4
-1.9
-0.3
+0.5
-0.1
+0.5
complex community
Community=arabino-guar; Passage=4
-1.2
+0.6
-0.3
+0.2
-0.5
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-1.3
+0.3
-0.3
+0.1
+0.0
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.5
+0.4
-0.8
-0.2
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-1.2
+0.0
-0.1
+0.1
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL
-1.3
+0.1
-0.1
+0.1
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL
-1.0
+0.2
-0.3
+0.2
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-1.0
+0.2
-0.1
-0.1
+0.2
complex community
Community=Locust bean gum; Passage=4
-1.7
-0.1
+1.3
-0.2
+0.0
complex community
Community=Locust bean gum; Passage=4
-1.5
+0.2
+0.2
+0.4
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-1.4
+0.3
+0.1
+0.2
+0.1
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.1
+0.2
-1.1
+0.1
+0.1
complex community
Community=Locust bean gum; Passage=4
-1.5
+0.5
+0.3
+0.0
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.8
+0.5
+0.1
+0.1
+0.1
no phage control
no phage control
-0.8
-0.0
+0.8
+0.1
-0.0
no phage control
no phage control
-0.5
+0.3
+0.7
+0.2
+0.2
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