Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_24500	PS417_24505	PS417_24510	PS417_24515	PS417_24520
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-4.2	+0.0	-0.0	N.D.	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-3.4	-0.1	+0.0	N.D.	+0.2
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-1.3	-2.6	+0.2	N.D.	+0.5
seeds	Growth on radish seeds for 72 hours	-2.9	-0.0	+0.5	N.D.	-0.8
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-2.5	+0.1	-0.9	N.D.	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-3.2	-0.2	+0.5	N.D.	-0.1
soil	soil sample 8; outgrowth in LB	-1.6	+0.1	-0.7	N.D.	-0.6
phage	P. simiae Grant Run MOI 0.1	-2.3	-0.0	-0.0	N.D.	-0.4
phage	JP1 MOI 1	-1.6	+0.0	-0.3	N.D.	-0.7
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-2.3	+0.0	-0.2	N.D.	-0.1
phage	P. simiae OR Antrim MOI 0.1	-2.6	+0.2	-0.5	N.D.	+0.3
agar plate interaction control	Taped volatile agar plate with no fungus	-2.4	-0.1	+0.1	N.D.	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-1.7	+0.1	-0.4	N.D.	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	-2.3	+0.2	+0.3	N.D.	-0.3
seeds	Growth on radish seeds for 72 hours	-2.5	+0.2	-0.2	N.D.	+0.4
soil	soil sample 5; outgrowth in LB	-2.3	-0.1	+0.3	N.D.	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-2.1	-0.1	+0.6	N.D.	-0.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.6	-0.1	+0.7	N.D.	-0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-3.0	+0.2	+0.1	N.D.	+1.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-2.2	+0.1	+0.0	N.D.	+0.5
seeds	Growth on radish seeds for 24 hours	-1.6	+0.3	+0.5	N.D.	-0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-1.5	-0.1	+0.9	N.D.	-0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.3	-0.2	+1.1	N.D.	-0.7
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.5	-0.2	-0.6	N.D.	+1.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.7	-0.1	+0.4	N.D.	+0.5
seeds	Growth on radish seeds for 72 hours	-1.9	+0.4	+0.8	N.D.	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.5	+0.2	+0.3	N.D.	+0.8
stress	methylglyoxal 0.032 vol%	-1.7	+0.0	+0.3	N.D.	+1.3
stress	Doxycycline hyclate 0.001 mg/ml	+1.9	-0.0	-0.5	N.D.	+0.2
stress	Gentamicin 0.008 mg/ml	+5.2	-0.5	-0.0	N.D.	-0.4