Fitness for 5 genes in Variovorax sp. SCN45

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 61 experiments or choose conditions or try the comparative fitness browser

500 ntGFF4778 and GFF4779 are separated by 10 nucleotidesGFF4779 and GFF4780 are separated by 76 nucleotidesGFF4780 and GFF4781 are separated by 93 nucleotidesGFF4781 and GFF4782 overlap by 1 nucleotides GFF4778 - Broad-specificity amino acid ABC transporter, permease protein 1, at 145,898 to 146,773 GFF4778 GFF4779 - Broad-specificity amino acid ABC transporter, permease protein 2, at 146,784 to 147,776 GFF4779 GFF4780 - hypothetical protein, at 147,853 to 148,308 GFF4780 GFF4781 - AttH component of AttEFGH ABC transport system, at 148,402 to 149,469 GFF4781 GFF4782 - Pyridoxal-5'-phosphate-dependent enzyme beta superfamily (fold type II), at 149,469 to 150,545 GFF4782
Group Condition GFF4778 GFF4779 GFF4780 GFF4781 GFF4782
complex community Community=Kojac gum; Passage=4 -0.8 -1.0 -0.4 -0.0 -0.4
complex community Community=guar; Passage=4 -1.2 -1.0 -0.4 +0.1 +0.1
complex community Community=arabino-guar; Passage=4 -0.0 -0.7 -0.5 +0.0 -0.2
complex community Community=arabino-guar; Passage=4 +0.2 -1.0 -0.5 -0.1 +0.1
complex community Community=Locust bean gum; Passage=4 -1.4 -0.2 +0.0 +0.1 +0.1
complex community Community=arabino-guar; Passage=4 +0.0 -0.6 -0.6 -0.1 +0.0
complex community Community=guar; Passage=4 -0.6 -0.1 -0.0 -0.1 -0.3
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.2 -0.3 -0.1 -0.1 -0.1
phage phage_bap4 -0.3 -0.1 -0.3 -0.1 -0.1
complex community Community=Locust bean gum; Passage=4 -0.3 -0.4 -0.0 -0.4 +0.4
vitamin M9 with calcium pantothenate 10 mg/mL -0.1 -0.5 +0.1 +0.1 +0.0
vitamin M9 with Supernatant from Cyptococcus -0.5 -0.3 +0.3 +0.0 -0.1
complex community Community=Locust bean gum; Passage=4 -0.1 -0.5 -0.2 +0.5 -0.2
complex community Community=arabino-guar; Passage=4 +0.3 -0.1 -0.8 -0.1 +0.2
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.3 -0.1 +0.2 -0.2 -0.1
vitamin M9 with Supernatant from Cyptococcus -0.1 -0.3 -0.0 +0.2 -0.2
phage phage_bap4 +0.2 -0.1 -0.2 -0.1 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.3 +0.4 -0.3 -0.1 +0.0
phage phage_bap4 +0.1 +0.3 -0.5 -0.1 -0.0
no phage control no phage control +0.3 +0.0 -0.3 +0.0 -0.2
complex community Community=guar; Passage=4 +0.4 -0.4 +0.2 -0.0 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.2 +0.2 +0.1 -0.1 +0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.2 -0.1 -0.2 +0.3 -0.1
phage phage_bap4 +0.5 -0.1 -0.2 -0.0 +0.0
vitamin M9 with Supernatant from Cyptococcus +0.1 -0.2 +0.3 +0.1 -0.3
complex community Community=Locust bean gum; Passage=4 +0.2 -0.5 -0.5 +0.2 +0.9
phage phage_bap4 +0.1 +0.2 +0.2 -0.1 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.2 +0.2 +0.3 +0.1 +0.0
complex community Community=guar; Passage=4 +0.2 -0.5 +0.5 +0.4 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.0 +0.2 +0.3 +0.3 -0.0
remove
GFF4778
plot		 remove
GFF4779
plot		 remove
GFF4780		 remove
GFF4781
plot		 remove
GFF4782
plot