Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_24380	PS417_24385	PS417_24390	PS417_24395	PS417_24400
stress	Gentamicin 0.008 mg/ml	-1.0	-0.7	-0.3	-1.2	+0.4
phage	P. simiae OR1 MOI 0.1	-0.9	-0.7	-0.1	+0.1	-1.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.8	-0.6	-0.3	-0.1	-0.8
motility	inner cut, LB soft agar motility assay	-0.4	-0.8	-0.5	-0.2	-0.5
motility	inner cut, LB soft agar motility assay	-0.4	-0.4	-0.3	-0.4	-0.6
root	root sample 6; outgrowth in LB	-1.6	-0.4	+0.3	-0.2	-0.0
supernatant control	Vogels_fungal_media 0.1X	-0.7	-0.5	-0.4	+0.5	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.1	-0.5	-0.1	-0.4	-0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-0.4	+0.2	-1.1	-0.5
liquid stress	Fraxetin 3 mM; liquid stress	-0.5	-1.5	+0.1	+0.0	+0.1
liquid stress	Fraxetin 3 mM; liquid stress	-0.4	-1.8	+0.1	+0.2	+0.1
liquid stress	Fraxetin 3 mM; liquid stress	-0.6	-1.5	-0.0	+0.4	-0.1
liquid stress	Scopoletin 3 mM; liquid stress	-0.6	-1.4	-0.1	+0.1	+0.4
supernatant control	Vogels_fungal_media 0.1X	-0.5	-0.3	+0.2	+0.0	-0.9
seeds	Growth on radish seeds for 72 hours	+0.3	-0.7	-0.1	-0.6	-0.4
liquid stress	Fraxetin 3 mM; liquid stress	-0.5	-1.2	+0.1	+0.0	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.1	-0.8	+0.2	+0.7	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	-1.5	+0.1	-0.1	+0.4
seeds	Growth on radish seeds for 72 hours	-0.8	-0.3	-0.3	+0.5	+0.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.0	-0.7	-0.3	+0.7	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-1.0	-0.0	+0.7	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.4	-0.3	-0.0	-1.3	+0.5
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-0.5	-0.8	+0.1	+0.4	+0.2
supernatant control	Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB	-0.3	-0.3	+0.0	+0.6	-0.6
liquid stress	80% Methanol 3 mM; liquid stress	-0.3	-0.7	-0.0	+0.5	+0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7	-0.6	-0.1	+1.2	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+1.1	-0.2	+0.1	-0.3	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.3	-0.5	+0.0	+0.2	+1.1
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.2	-0.7	+0.3	-0.0	+0.6
agar plate interaction control	Taped volatile agar plate with no fungus	+0.6	+0.4	-0.5	-0.2	+0.4