Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_24370	PS417_24375	PS417_24380	PS417_24385	PS417_24390
phage	P. simiae OR1 MOI 0.1	-4.3	-0.1	-0.9	-0.7	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-4.7	-0.2	-0.1	-0.8	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-2.8	-0.2	-0.8	-0.4	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-4.0	-0.5	+0.1	+0.2	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-2.1	-0.4	+0.2	-1.5	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-2.5	-0.3	-0.3	-0.5	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-2.9	+0.0	+0.2	-0.5	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.3	-0.2	-1.1	-0.8	+0.2
soil	soil sample 8; outgrowth in LB	-2.6	+0.1	-0.4	-0.2	-0.1
motility_chemotaxis	Method=Plug_approach; Chemical=None; Chemical_conc=0mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-2.9	+0.1	+0.0	-0.3	+0.0
supernatant control	Vogels_fungal_media 0.1X	-1.2	-0.3	-0.7	-0.5	-0.4
solid stress	Fraxetin 1 mM; solid stress	-2.6	-0.1	+0.1	-0.3	-0.1
phage	Wcs_0.1	-1.8	-0.1	-0.3	-0.8	-0.1
root	root sample 6; outgrowth in LB	-0.7	-0.6	-1.6	-0.4	+0.3
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-1.7	-0.4	-0.9	+0.0	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-1.6	-0.3	-0.9	-0.0	-0.1
carbon source	L-Valine (C)	-2.5	-0.3	-0.1	-0.2	+0.3
stress	Paraquat dichloride 0.008 mg/ml	-2.9	-0.0	+0.1	+0.1	-0.1
soil	soil sample 4; outgrowth in LB	-2.5	-0.2	-0.4	-0.0	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-1.8	-0.2	-0.3	-0.5	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.8	-0.3	+0.4	-0.7	+0.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	-2.2	-0.0	-0.2	+0.5	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-1.8	-0.2	+0.5	-0.4	-0.2
rhizosphere	rhizosphere sample 1; outgrowth in LB	-1.5	-0.1	+0.3	+0.4	-0.7
carbon source	2-Deoxy-D-Ribose (C)	-2.3	+0.0	+0.5	+0.2	+0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	+0.5	-1.0	-0.7	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-1.8	+0.3	+1.1	-0.2	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.1	+0.2	-0.8	-0.6	-0.3
supernatant control	Vogels_fungal_media 0.1X	+2.1	-0.2	-0.5	-0.3	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.9	+0.2	-0.3	-0.5	+0.1