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Cofit
Protein
Homologs
Fitness for 5 genes in
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF4758 and GFF4759 overlap by 1 nucleotides
GFF4759 and GFF4760 overlap by 23 nucleotides
GFF4760 and GFF4761 overlap by 4 nucleotides
GFF4761 and GFF4762 are separated by 23 nucleotides
GFF4758 - Type III secretion host injection and negative regulator protein (YopD), at 65,029 to 66,039
GFF4758
GFF4759 - Surface presentation of antigens protein SpaM, at 66,039 to 66,482
GFF4759
GFF4760 - Type III secretion cytoplasmic ATP synthase (EC 3.6.3.14, YscN,SpaL,MxiB,HrcN,EscN), at 66,460 to 67,755
GFF4760
GFF4761 - Type III secretion system protein BsaR, at 67,752 to 68,159
GFF4761
GFF4762 - Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV), at 68,183 to 70,240
GFF4762
Group
Condition
GFF4758
GFF4759
GFF4760
GFF4761
GFF4762
phage
LB_plus_SM_buffer with FelixO1_phage (wt_new) 2 MOI
-0.5
-1.2
-0.4
-1.0
-0.3
phage
LB_plus_SM_buffer with FelixO1_phage (old) 15 MOI
-0.3
-0.5
-0.5
-0.6
-0.0
phage
LB_plus_SM_buffer with FelixO1_phage (old) 15 MOI
-0.2
-0.6
-0.5
-0.4
-0.0
phage
LB_plus_SM_buffer with FelixO1_phage (wt_new) 2 MOI
-0.3
-0.5
-0.4
-0.2
-0.3
phage
LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI
-0.2
-0.4
-0.2
-0.7
-0.2
micoeukaryotes
C.elegans, mixed culture-1
-0.3
-0.5
-0.2
-0.3
-0.2
phage
LB_plus_SM_buffer with S16_phage 15 MOI
-0.5
-0.5
-0.2
-0.2
+0.2
phage
LB_plus_SM_buffer with 6F2_phage 15 MOI
-0.2
-0.4
-0.2
-0.3
-0.1
phage
LB_plus_SM_buffer with 6D2_phage 15 MOI
+0.0
-0.8
-0.5
+0.0
+0.1
phage
LB_plus_SM_buffer with Ffm_phage 18.75 MOI
-0.3
-0.7
-0.0
-0.2
+0.1
phage
LB_plus_SM_buffer with 8C2_phage 15 MOI
-0.3
-0.5
+0.3
-0.4
+0.0
phage
LB_plus_SM_buffer with 6F2_phage 15 MOI
-0.0
-0.7
-0.1
-0.1
+0.2
phage
LB_plus_SM_buffer with S16_phage 15 MOI
-0.4
-0.3
+0.1
-0.2
+0.1
phage
LB_plus_SM_buffer with Ffm_phage 0.001875 MOI
-0.3
-0.2
+0.2
-0.4
+0.1
phage
LB_plus_SM_buffer with 6F2_phage 0.1875 MOI
-0.2
-0.4
-0.0
-0.2
+0.3
phage
LB_plus_SM_buffer with P22_phage 15 MOI
-0.1
-0.8
+0.2
+0.2
-0.0
phage
LB_plus_SM_buffer with EIP16_phage 0.0875 MOI
-0.2
-0.1
+0.3
-0.4
+0.0
phage
LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI
-0.0
-0.9
-0.1
+0.3
+0.3
phage
LB_plus_SM_buffer with ES18h1_phage 0.00075 MOI
-0.0
-1.1
+0.5
+0.1
+0.1
phage
6F2_phage 15 MOI
+0.1
-0.5
+0.1
-0.2
+0.4
phage
LB_plus_SM_buffer with Br60_phage 0.0005 MOI
-0.4
-0.3
-0.2
-0.1
+0.8
phage
LB_plus_SM_buffer with FelixO1_phage 0.5 MOI
+0.5
-0.7
-0.3
+0.3
+0.2
phage
LB_plus_SM_buffer with 6F2_phage 1.875 MOI
+0.1
-0.4
-0.3
+0.6
+0.2
phage
LB_plus_SM_buffer with ES18h1_phage 0.75 MOI
+0.6
-0.3
-0.0
-0.4
+0.2
nophagecontrol
No phage control
+0.1
+0.3
-0.3
+0.3
-0.2
phage
6H2_phage 10 MOI; agar plate assay
+0.1
-0.4
+0.1
+0.5
+0.0
phage
LB_plus_SM_buffer with Br60_phage 0.000005 MOI
-0.1
+0.5
-0.1
+0.3
-0.2
lb_plus_sm_buffer
LB_plus_SM_buffer
-0.2
+0.2
+0.3
+0.3
-0.1
phage
phi19h1_phage 15 MOI
+0.4
+0.4
-0.1
+0.2
-0.1
phage
LB_plus_SM_buffer with phi19h1_phage 0.001875 MOI
+0.2
+0.4
-0.0
+0.5
-0.0
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