Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_24300	PS417_24305	PS417_24310	PS417_24315	PS417_24320
stress	Cisplatin 0.01 mg/ml	-0.3	-3.4	-0.1	+0.5	-0.5
carbon source	L-Valine (C)	-1.2	-0.5	+0.2	+0.6	-1.1
stress	Gentamicin 0.008 mg/ml	-0.2	-0.4	-0.1	-0.1	-0.9
carbon source	octanoate (C)	-0.1	+0.1	-1.3	-0.1	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-0.1	-1.0	-0.6	+0.2
stress	methylglyoxal 0.032 vol%	-0.5	-1.0	+0.3	+0.7	-0.9
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	+0.1	-0.5	+0.3	-0.9
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	+0.5	-0.8	+0.0	-0.8
supernatant control	Vogels_fungal_media; pH 5.5	+0.0	+0.4	-0.8	-0.4	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.0	+0.2	-0.5	-0.9	+0.3
liquid stress	Fraxetin 3 mM; liquid stress	+0.1	+0.1	-0.8	+0.2	-0.4
supernatant control	Vogels_fungal_media 0.1X	-0.2	+0.5	-1.1	-0.1	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.4	-1.2	+0.2	+0.0
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.7	-0.5	-0.0	+0.1	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.1	+0.5	-0.5	-0.5	-0.1
carbon source	2'-Deoxyinosine 5 mM (C)	+0.3	+0.1	-1.0	+0.3	-0.2
soil	soil sample 3; outgrowth in LB	+0.0	-0.5	-1.0	+0.3	+0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	+0.8	-0.4	-0.5	-0.1
soil	soil sample 7; outgrowth in LB	+0.4	-0.4	-0.5	+0.5	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	-0.1	-0.8	-0.2	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	+0.2	-0.4	+0.1	+0.6
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.0	-0.6	-0.1	+0.7	+0.3
rhizosphere	rhizosphere sample 8; outgrowth in LB	-0.1	-0.5	+0.4	+0.8	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.7	+0.2	-0.7	+0.3	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.2	+0.3	-1.9	+0.7	+1.1
root	root sample 6; outgrowth in LB	+0.6	-0.0	+0.2	+0.3	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.5	+0.3	-0.2	+0.6	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.3	-0.2	+0.7	-0.2	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	+0.3	+0.7	+0.3	-0.2
seeds	Growth on radish seeds for 72 hours	+0.5	+0.1	+0.3	+0.7	+0.5