Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_24285	PS417_24290	PS417_24295	PS417_24300	PS417_24305
soil	soil sample 3; outgrowth in LB	-0.4	-1.9	-2.0	+0.0	-0.5
soil	soil sample 5; outgrowth in LB	-0.8	-1.6	-1.5	-0.1	-0.9
soil	soil sample 4; outgrowth in LB	-0.9	-1.2	-1.6	-0.1	-0.3
soil	soil sample 8; outgrowth in LB	-1.1	-1.6	-1.3	+0.0	+0.1
carbon source	pyruvate (C)	-0.7	-1.8	-1.5	-0.0	+0.1
soil	soil sample 7; outgrowth in LB	-1.1	-1.7	-1.0	+0.4	-0.4
carbon source	pyruvate (C)	-0.8	-1.3	-1.7	+0.1	+0.2
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.2	-2.2	-0.8	+0.2	-0.3
stress	Cisplatin 0.01 mg/ml	-0.1	+0.4	+0.1	-0.3	-3.4
stress	methylglyoxal 0.032 vol%	-0.3	-0.1	-0.7	-0.5	-1.0
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.1	-1.3	-0.7	-0.2	-0.2
rhizosphere	rhizosphere sample 8; outgrowth in LB	-0.2	-0.5	-1.1	-0.1	-0.5
soil	soil sample 6; outgrowth in LB	-0.6	-0.7	-1.1	+0.2	-0.1
phage	JP1 MOI 1	-0.3	-1.1	-0.4	-0.2	-0.3
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.5	-0.9	-0.8	-0.0	-0.0
agar plate interaction control	Taped volatile agar plate with no fungus	-1.0	+0.0	-0.7	-0.3	-0.0
root	root sample 6; outgrowth in LB	-0.6	-1.4	-0.5	+0.6	-0.0
phage	P. simiae OR Antrim MOI 1	-0.4	-0.8	+0.0	-0.0	-0.6
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.3	-1.1	-0.5	-0.1	+0.3
carbon source	L-Valine (C)	-0.4	+0.3	+0.1	-1.2	-0.5
soil	soil sample 2; outgrowth in LB	-0.2	-0.7	-0.6	+0.1	+0.3
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.3	-0.7	-0.6	-0.2	+0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	-1.3	+0.1	+0.1	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.2	+0.8	-0.3	+0.1	-0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.1	+0.6	+0.3	-0.7	-0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.1	+0.4	+0.5	-0.4	-0.3
phage	JP1 MOI 0.1	+0.8	+0.4	+0.0	+0.4	-0.3
seeds	Growth on radish seeds for 72 hours	+0.8	-0.0	+0.6	-0.2	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.2	+0.2	+0.9	+0.5	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	+0.5	+0.1	+0.6	+0.3