Fitness for 5 genes in Pseudomonas simiae WCS417

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 552 experiments or choose conditions or try the comparative fitness browser

500 ntPS417_24275 and PS417_24280 are separated by 241 nucleotidesPS417_24280 and PS417_24285 are separated by 111 nucleotidesPS417_24285 and PS417_24290 are separated by 156 nucleotidesPS417_24290 and PS417_24295 are separated by 15 nucleotides PS417_24275: PS417_24275 - diguanylate phosphodiesterase, at 5,265,968 to 5,269,819 _24275 PS417_24280: PS417_24280 - serine hydroxymethyltransferase, at 5,270,061 to 5,271,314 _24280 PS417_24285: PS417_24285 - GTP-binding protein, at 5,271,426 to 5,272,385 _24285 PS417_24290: PS417_24290 - hypothetical protein, at 5,272,542 to 5,272,739 _24290 PS417_24295: PS417_24295 - carbon starvation protein A, at 5,272,755 to 5,274,821 _24295
Group Condition PS417_24275 PS417_24280 PS417_24285 PS417_24290 PS417_24295
phage P. simiae Grant Run MOI 10 -4.9 N.D. -0.2 +0.4 +0.1
phage JP1 MOI 1 -2.8 N.D. -0.3 -1.1 -0.4
phage JP1 MOI 10 -3.2 N.D. -0.1 -0.5 -0.4
phage P. simiae Grant Run MOI 10 -5.0 N.D. -0.3 +0.6 +0.7
carbon source pyruvate (C) -0.1 N.D. -0.7 -1.8 -1.5
soil soil sample 5; outgrowth in LB +0.1 N.D. -0.8 -1.6 -1.5
phage P. simiae OR Antrim MOI 10 -3.1 N.D. -0.4 +0.5 -0.4
phage P. simiae ORA MOI 10 -2.8 N.D. -0.4 -0.4 +0.4
soil soil sample 7; outgrowth in LB +0.6 N.D. -1.1 -1.7 -1.0
soil soil sample 4; outgrowth in LB +0.7 N.D. -0.9 -1.2 -1.6
soil soil sample 3; outgrowth in LB +1.5 N.D. -0.4 -1.9 -2.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.7 N.D. -1.2 +0.8 -0.3
phage JP1 MOI 0.1 -3.6 N.D. +0.8 +0.4 +0.0
soil soil sample 8; outgrowth in LB +1.7 N.D. -1.1 -1.6 -1.3
stress Dimethyl Sulfoxide 5 vol% +3.0 N.D. -0.1 -0.5 -0.2
liquid stress Scopoletin 3 mM; liquid stress +3.1 N.D. -0.3 -0.4 -0.1
liquid stress Scopoletin 2 mM; liquid stress +3.4 N.D. -0.4 -0.1 -0.1
liquid stress Fraxetin 2 mM; liquid stress +3.4 N.D. -0.2 +0.2 -0.1
liquid stress 80% Methanol 3 mM; liquid stress +3.7 N.D. +0.2 -0.3 -0.0
liquid stress 80% Methanol 3 mM; liquid stress +4.0 N.D. -0.2 -0.2 -0.0
liquid stress 80% Methanol 2 mM; liquid stress +3.5 N.D. -0.4 +0.4 +0.0
liquid stress 80% Methanol 3 mM; liquid stress +3.7 N.D. +0.1 +0.2 +0.0
liquid stress 80% Methanol 2 mM; liquid stress +4.0 N.D. +0.2 +0.2 -0.3
liquid stress Fraxetin 2 mM; liquid stress +4.3 N.D. -0.0 +0.1 -0.1
liquid stress Fraxetin 2 mM; liquid stress +4.0 N.D. +0.0 +0.4 +0.1
liquid stress Scopoletin 2 mM; liquid stress +4.2 N.D. -0.0 +0.1 +0.2
liquid stress 80% Methanol 2 mM; liquid stress +4.7 N.D. -0.2 +0.3 -0.0
liquid stress 80% Methanol 3 mM; liquid stress +4.7 N.D. +0.0 +0.1 -0.0
liquid stress 80% Methanol 2 mM; liquid stress +4.3 N.D. -0.0 +0.5 +0.0
liquid stress Fraxetin 2 mM; liquid stress +4.7 N.D. +0.2 -0.0 -0.0
remove
PS417_24275
plot		 remove
PS417_24280
plot		 remove
PS417_24285		 remove
PS417_24290
plot		 remove
PS417_24295
plot