Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_24250	PS417_24255	PS417_24260	PS417_24265	PS417_24270
stress	methylglyoxal 0.032 vol%	N.D.	-1.0	-0.0	-0.7	-0.8
carbon source	L-Valine (C)	N.D.	+0.3	-0.5	-2.5	+0.3
phage	P. simiae OR1 MOI 0.1	N.D.	-0.7	-0.4	-0.6	-0.3
carbon source	L-Valine (C)	N.D.	+0.2	-0.2	-2.1	+0.4
solid stress	Fraxetin 3 mM; solid stress	N.D.	+0.2	-0.2	-1.4	-0.2
motility	outer cut, LB soft agar motility assay	N.D.	+0.1	+0.1	-1.0	-0.8
stress	Gentamicin 0.008 mg/ml	N.D.	-0.2	+0.1	-1.6	+0.4
solid stress	Fraxetin 3 mM; solid stress	N.D.	+0.1	+0.4	-1.4	+0.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	+0.6	-0.5	-0.9	+0.4
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	-0.4	-0.5	+0.8	-0.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	+0.3	+0.7	-0.9	-0.2
phage	P. simiae OR Antrim MOI 10	N.D.	-0.0	-0.1	+1.0	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.0	-0.5	+1.1	-0.7
phage	JP1 MOI 10	N.D.	-0.3	-0.3	+1.1	-0.6
phage	P. simiae Grant Run MOI 10	N.D.	-0.2	+0.2	+1.0	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.1	-0.1	+1.6	-1.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	-0.2	+0.2	+1.1	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.1	-0.2	+1.3	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.4	+0.2	+1.5	-0.2
phage	P. simiae OR Antrim MOI 1	N.D.	-0.3	-0.1	+1.5	+0.2
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.6	-0.4	+1.0	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.2	+0.2	+1.5	-0.2
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-0.1	-0.2	+1.6	+0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.2	+0.6	+0.9	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	-0.2	+0.4	+1.0	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.5	+0.3	+1.2	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.3	+0.3	+1.3	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.1	-0.2	+1.6	+0.2
root	root sample 6; outgrowth in LB	N.D.	+0.6	+0.3	+0.9	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.7	+0.7	+1.6	-0.5