Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_24220	PS417_24225	PS417_24230	PS417_24235	PS417_24240
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.2	-0.4	-1.3	-1.5	-0.4
stress	methylglyoxal 0.032 vol%	-0.2	+0.4	-2.6	-0.1	-0.5
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.2	+0.2	-1.4	-1.0	-1.0
phage	JP1 MOI 10	-0.3	-1.0	+0.0	-0.5	-0.9
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.4	-0.3	-1.4	-0.3	-1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	-0.5	-0.1	-1.9	+0.0
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.0	+0.5	-1.3	-0.7	-0.7
rhizosphere	rhizosphere sample 1; outgrowth in LB	+0.5	-0.7	-0.8	-0.7	-0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.2	+0.6	-1.4	-0.6	-0.8
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.3	-0.6	-0.7	-0.6	-0.3
seeds	Growth on radish seeds for 24 hours	+0.0	-0.4	-1.0	-0.8	+0.3
agar plate interaction control	Taped volatile agar plate with no fungus	+0.3	-0.2	-0.5	-1.6	+0.1
seeds	Growth on radish seeds for 72 hours	+0.1	-0.8	-1.0	+0.5	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	+0.3	-0.5	-0.4	-1.2
phage	P. simiae OR Antrim MOI 0.1	+0.2	-1.2	-0.6	+0.4	-0.4
motility	inner cut, LB soft agar motility assay	+0.3	-0.7	-1.2	-0.5	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.1	-0.8	-0.9	-0.3	+0.5
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.1	+0.7	-0.7	-0.5	-0.7
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.2	+0.8	-1.0	-1.0	-0.0
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	-0.2	+0.8	+0.4	-0.8	-0.6
carbon source	2'-Deoxyinosine 5 mM (C)	-0.1	-0.9	-0.4	+0.7	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	+0.5	-1.3	+0.7	-0.6
phage	P. simiae OR1 MOI 0.1	-0.6	+1.4	-0.6	-0.8	+0.7
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	+0.1	+0.7	-1.4	+0.6	+0.3
soil	soil sample 7; outgrowth in LB	+0.1	+0.6	-0.4	+1.1	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	+0.5	+0.0	-1.1	+1.2	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.1	+3.1	-0.6	-0.5	-0.6
stress	Doxycycline hyclate 0.001 mg/ml	-0.2	+0.6	+1.8	-0.9	+0.2
carbon source	L-Valine (C)	+0.2	+0.1	-0.2	+1.9	+0.6
stress	Gentamicin 0.008 mg/ml	+0.1	+0.4	+3.2	-0.7	-0.2