Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_24210	PS417_24215	PS417_24220	PS417_24225	PS417_24230
stress	methylglyoxal 0.032 vol%	+0.2	N.D.	-0.2	+0.4	-2.6
motility	inner cut, LB soft agar motility assay	-0.1	N.D.	-0.0	-0.7	-1.0
supernatant control	Vogels_fungal_media 0.1X	-0.4	N.D.	+0.0	-1.4	+0.1
motility	outer cut, LB soft agar motility assay	-0.0	N.D.	-0.1	+0.0	-1.6
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.1	N.D.	+0.2	-0.4	-1.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.0	N.D.	+0.1	-0.8	-0.9
motility	inner cut, LB soft agar motility assay	-0.0	N.D.	+0.3	-0.7	-1.2
phage	P. simiae OR Antrim MOI 0.1	-0.0	N.D.	+0.2	-1.2	-0.6
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.1	N.D.	+0.4	-0.3	-1.4
motility	outer cut, LB soft agar motility assay	+0.1	N.D.	+0.1	+0.1	-1.7
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.3	N.D.	+0.5	-0.7	-0.8
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	N.D.	-0.1	-1.3	-0.2
seeds	Growth on radish seeds for 72 hours	+0.1	N.D.	+0.2	-0.8	-0.8
supernatant control	Vogels_fungal_media 0.1X	-0.4	N.D.	-0.1	-1.0	+0.2
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	+0.0	N.D.	+0.2	-1.2	-0.3
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.2	N.D.	+0.2	+0.2	-1.4
seeds	Growth on radish seeds for 72 hours	+0.4	N.D.	+0.1	-0.8	-1.0
soil	soil sample 5; outgrowth in LB	-0.1	N.D.	+0.3	-0.4	-0.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	N.D.	+0.5	-0.5	-0.6
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.0	N.D.	-0.0	+0.5	-1.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.0	N.D.	+0.2	+0.6	-1.4
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-0.0	N.D.	+0.1	+0.7	-1.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	+0.3	N.D.	+0.5	+0.0	-1.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	N.D.	+0.5	+0.5	-1.3
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.1	N.D.	+0.2	+0.8	-1.0
phage	P. simiae OR1 MOI 0.1	+0.0	N.D.	-0.6	+1.4	-0.6
solid stress	Fraxetin 3 mM; solid stress	+0.5	N.D.	-0.7	+0.4	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.1	N.D.	-0.1	+3.1	-0.6
stress	Doxycycline hyclate 0.001 mg/ml	+0.5	N.D.	-0.2	+0.6	+1.8
stress	Gentamicin 0.008 mg/ml	-0.1	N.D.	+0.1	+0.4	+3.2