Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_24205	PS417_24210	PS417_24215	PS417_24220	PS417_24225
supernatant control	Vogels_fungal_media 0.1X	-0.0	-0.4	N.D.	+0.0	-1.4
supernatant control	Vogels_fungal_media 0.1X	-0.2	-0.4	N.D.	-0.1	-1.0
phage	JP1 MOI 10	-0.3	+0.0	N.D.	-0.3	-1.0
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	+0.0	+0.0	N.D.	+0.2	-1.2
seeds	Growth on radish seeds for 72 hours	-0.4	+0.1	N.D.	+0.2	-0.8
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	+0.2	N.D.	-0.1	-1.3
phage	P. simiae OR Antrim MOI 0.1	+0.2	-0.0	N.D.	+0.2	-1.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.1	+0.1	N.D.	+0.2	-1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.1	-0.2	N.D.	+0.5	-0.9
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.1	-0.3	N.D.	+0.5	-0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.1	+0.2	N.D.	+0.3	-1.0
solid stress	Fraxetin 3 mM; solid stress	-0.1	+0.4	N.D.	-0.9	+0.0
stress	R2A with Fusaric 120 ug/mL	+0.2	+0.2	N.D.	+0.1	-0.9
solid stress	Fraxetin 2 mM; solid stress	+0.0	+0.4	N.D.	-0.4	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	+0.2	N.D.	+0.2	-1.0
seeds	Growth on radish seeds for 72 hours	-0.2	+0.4	N.D.	+0.1	-0.8
stress	Dimethyl Sulfoxide 5 vol%	+0.1	-0.6	N.D.	-0.2	+0.5
solid stress	Fraxetin 3 mM; solid stress	+0.2	+0.5	N.D.	-0.8	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	-0.2	N.D.	+0.6	-0.3
solid stress	Fraxetin 3 mM; solid stress	+0.3	+0.5	N.D.	-0.7	+0.4
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	-0.3	+0.2	N.D.	-0.2	+0.8
stress	2-Furfuraldehyde 0.03 vol%	+0.3	+0.3	N.D.	-0.2	+0.5
phage	P. simiae OR1 MOI 0.1	+0.1	+0.0	N.D.	-0.6	+1.4
soil	soil sample 2; outgrowth in LB	+0.1	-0.1	N.D.	+0.3	+0.8
phage	P. simiae ORA MOI 0.1	+0.0	+0.1	N.D.	-0.1	+1.0
stress	Doxycycline hyclate 0.001 mg/ml	+0.2	+0.5	N.D.	-0.2	+0.6
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.1	-0.1	N.D.	+0.5	+0.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.1	+0.4	N.D.	+0.3	+0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	+0.1	N.D.	+0.5	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.2	-0.1	N.D.	-0.1	+3.1