Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_24090 and PS417_24095 are separated by 168 nucleotidesPS417_24095 and PS417_24100 are separated by 36 nucleotidesPS417_24100 and PS417_24105 are separated by 252 nucleotidesPS417_24105 and PS417_24110 are separated by 69 nucleotides PS417_24090: PS417_24090 - ribosome association toxin RatA, at 5,215,911 to 5,216,345 _24090 PS417_24095: PS417_24095 - SsrA-binding protein, at 5,216,514 to 5,216,996 _24095 PS417_24100: PS417_24100 - transcriptional regulator PdhR, at 5,217,033 to 5,217,800 _24100 PS417_24105: PS417_24105 - D-lactate transporter (lctP family) (from data), at 5,218,053 to 5,219,747 _24105 PS417_24110: PS417_24110 - 4Fe-4S ferredoxin, at 5,219,817 to 5,222,627 _24110
Group Condition PS417_24090 PS417_24095 PS417_24100 PS417_24105 PS417_24110
carbon source D-Lactate (C) N.D. N.D. +0.7 -3.9 -4.1
carbon source D-Lactate (C) N.D. N.D. +0.7 -3.8 -3.8
carbon source L-Leucine (C) N.D. N.D. -3.4 -0.1 -0.1
carbon source Gly-Glu (C) N.D. N.D. -3.6 +0.1 +0.1
carbon source L-Leucine (C) N.D. N.D. -3.3 -0.1 +0.1
carbon source Gly-Glu (C) N.D. N.D. -3.0 +0.0 +0.0
carbon source NAG (C) N.D. N.D. -2.4 -0.0 +0.1
carbon source NAG (C) N.D. N.D. -2.2 +0.0 -0.0
carbon source D,L-Lactate (C) N.D. N.D. +0.0 -1.1 -0.4
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. N.D. -1.4 -0.2 +0.1
carbon source 2'-Deoxyinosine 5 mM (C) N.D. N.D. -1.8 +0.3 +0.0
carbon source 2'-Deoxyinosine 5 mM (C) N.D. N.D. -1.8 +0.3 +0.1
carbon source L-Valine (C) N.D. N.D. -1.5 +0.1 -0.0
carbon source D,L-Lactate (C) N.D. N.D. +0.1 -1.3 -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days N.D. N.D. -1.3 +0.0 +0.0
seeds Growth on radish seeds for 72 hours N.D. N.D. -1.1 -0.2 +0.5
stress methylglyoxal 0.032 vol% N.D. N.D. -1.1 +0.1 +0.5
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. N.D. -0.8 +0.2 +0.4
solid stress Fraxetin 3 mM; solid stress N.D. N.D. +1.2 -0.9 +0.1
solid stress Fraxetin 3 mM; solid stress N.D. N.D. +1.1 -0.6 +0.1
solid stress Fraxetin 3 mM; solid stress N.D. N.D. +1.4 -0.7 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. +1.2 -0.2 -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. +1.2 -0.1 -0.1
solid stress Fraxetin 3 mM; solid stress N.D. N.D. +1.7 -0.6 -0.1
soil soil sample 5; outgrowth in LB N.D. N.D. +1.3 -0.3 +0.0
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. +1.3 -0.2 +0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. +1.5 -0.1 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. +1.4 +0.1 +0.4
carbon source pyruvate (C) N.D. N.D. +3.0 -0.1 -0.0
carbon source pyruvate (C) N.D. N.D. +3.4 -0.0 -0.1
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