Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_24080 and PS417_24085 are separated by 63 nucleotidesPS417_24085 and PS417_24090 overlap by 8 nucleotidesPS417_24090 and PS417_24095 are separated by 168 nucleotidesPS417_24095 and PS417_24100 are separated by 36 nucleotides PS417_24080: PS417_24080 - membrane protein, at 5,215,025 to 5,215,552 _24080 PS417_24085: PS417_24085 - protein RnfH, at 5,215,616 to 5,215,918 _24085 PS417_24090: PS417_24090 - ribosome association toxin RatA, at 5,215,911 to 5,216,345 _24090 PS417_24095: PS417_24095 - SsrA-binding protein, at 5,216,514 to 5,216,996 _24095 PS417_24100: PS417_24100 - transcriptional regulator PdhR, at 5,217,033 to 5,217,800 _24100
Group Condition PS417_24080 PS417_24085 PS417_24090 PS417_24095 PS417_24100
carbon source Gly-Glu (C) N.D. -0.9 N.D. N.D. -3.6
carbon source L-Leucine (C) N.D. -0.6 N.D. N.D. -3.4
carbon source Gly-Glu (C) N.D. -0.7 N.D. N.D. -3.0
carbon source 2'-Deoxyinosine 5 mM (C) N.D. -1.4 N.D. N.D. -1.8
seeds Growth on radish seeds for 72 hours N.D. -3.0 N.D. N.D. -0.1
carbon source L-Leucine (C) N.D. +0.3 N.D. N.D. -3.3
seeds Growth on radish seeds for 72 hours N.D. -1.5 N.D. N.D. -1.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days N.D. -1.3 N.D. N.D. -1.3
carbon source NAG (C) N.D. +0.1 N.D. N.D. -2.4
carbon source NAG (C) N.D. +0.1 N.D. N.D. -2.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.4 N.D. N.D. -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -1.9 N.D. N.D. +0.1
carbon source 2'-Deoxyinosine 5 mM (C) N.D. +0.0 N.D. N.D. -1.8
carbon source L-Valine (C) N.D. -0.2 N.D. N.D. -1.5
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -1.4 N.D. N.D. +0.5
soil soil sample 6; outgrowth in LB N.D. -1.2 N.D. N.D. +0.8
rhizosphere rhizosphere sample 2; outgrowth in LB N.D. +1.0 N.D. N.D. -0.7
carbon source L-Valine (C) N.D. +1.2 N.D. N.D. -0.7
solid stress Fraxetin 3 mM; solid stress N.D. -0.8 N.D. N.D. +1.4
soil soil sample 5; outgrowth in LB N.D. -0.7 N.D. N.D. +1.3
solid stress Fraxetin 3 mM; solid stress N.D. -1.0 N.D. N.D. +1.7
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.4 N.D. N.D. +1.3
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. +1.6 N.D. N.D. -0.7
motility inner cut, LB soft agar motility assay N.D. +1.2 N.D. N.D. -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. +0.2 N.D. N.D. +1.4
stress Gentamicin 0.008 mg/ml N.D. +1.3 N.D. N.D. +0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.3 N.D. N.D. +1.5
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. +2.3 N.D. N.D. -0.3
carbon source pyruvate (C) N.D. +0.6 N.D. N.D. +3.0
carbon source pyruvate (C) N.D. +0.1 N.D. N.D. +3.4
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