Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_24050 and PS417_24055 are separated by 10 nucleotidesPS417_24055 and PS417_24060 are separated by 317 nucleotidesPS417_24060 and PS417_24065 are separated by 102 nucleotidesPS417_24065 and PS417_24070 are separated by 254 nucleotides PS417_24050: PS417_24050 - dihydrodipicolinate reductase, at 5,207,660 to 5,208,466 _24050 PS417_24055: PS417_24055 - molecular chaperone DnaJ, at 5,208,477 to 5,209,601 _24055 PS417_24060: PS417_24060 - molecular chaperone DnaK, at 5,209,919 to 5,211,841 _24060 PS417_24065: PS417_24065 - heat shock protein GrpE, at 5,211,944 to 5,212,507 _24065 PS417_24070: PS417_24070 - recombination and repair protein, at 5,212,762 to 5,214,435 _24070
Group Condition PS417_24050 PS417_24055 PS417_24060 PS417_24065 PS417_24070
stress Cisplatin 0.01 mg/ml N.D. N.D. N.D. N.D. -4.3
stress methylglyoxal 0.032 vol% N.D. N.D. N.D. N.D. -1.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. -1.4
stress Nalidixic 0.025 mg/ml N.D. N.D. N.D. N.D. -1.2
stress Cobalt chloride 0.16 mM N.D. N.D. N.D. N.D. -1.1
stress Lomefloxacin 0.0001 mM N.D. N.D. N.D. N.D. -1.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. -0.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. -0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. -0.7
agar plate interaction control Taped volatile agar plate with no fungus N.D. N.D. N.D. N.D. -0.6
solid stress Fraxetin 3 mM; solid stress N.D. N.D. N.D. N.D. -0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. -0.6
soil soil sample 3; outgrowth in LB N.D. N.D. N.D. N.D. -0.6
motility inner cut, LB soft agar motility assay N.D. N.D. N.D. N.D. -0.6
motility outer cut, LB soft agar motility assay N.D. N.D. N.D. N.D. -0.6
stress Nalidixic 0.015 mg/ml N.D. N.D. N.D. N.D. -0.6
soil soil sample 4; outgrowth in LB N.D. N.D. N.D. N.D. -0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. -0.6
liquid stress 80% Methanol 2 mM; liquid stress N.D. N.D. N.D. N.D. -0.5
solid stress 80% Methanol 2 mM; solid stress N.D. N.D. N.D. N.D. -0.5
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. -0.5
stress Thallium(I) acetate 0.0625 mg/ml N.D. N.D. N.D. N.D. -0.5
motility inner cut, LB soft agar motility assay N.D. N.D. N.D. N.D. -0.5
solid stress Fraxetin 3 mM; solid stress N.D. N.D. N.D. N.D. -0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. -0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. -0.5
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. -0.5
supernatant LB 0.5x with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x N.D. N.D. N.D. N.D. -0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. -0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. +0.7
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