Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_24030 and PS417_24035 are separated by 28 nucleotidesPS417_24035 and PS417_24040 overlap by 4 nucleotidesPS417_24040 and PS417_24045 are separated by 105 nucleotidesPS417_24045 and PS417_24050 are separated by 259 nucleotides PS417_24030: PS417_24030 - MFS transporter, at 5,202,031 to 5,202,435 _24030 PS417_24035: PS417_24035 - transcription elongation factor GreA, at 5,202,464 to 5,202,940 _24035 PS417_24040: PS417_24040 - carbamoyl phosphate synthase large subunit, at 5,202,937 to 5,206,158 _24040 PS417_24045: PS417_24045 - carbamoyl phosphate synthase small subunit, at 5,206,264 to 5,207,400 _24045 PS417_24050: PS417_24050 - dihydrodipicolinate reductase, at 5,207,660 to 5,208,466 _24050
Group Condition PS417_24030 PS417_24035 PS417_24040 PS417_24045 PS417_24050
stress Gentamicin 0.008 mg/ml -2.5 N.D. N.D. N.D. N.D.
seeds Growth on radish seeds for 72 hours -1.9 N.D. N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.8 N.D. N.D. N.D. N.D.
rhizosphere rhizosphere sample 1; outgrowth in LB -1.7 N.D. N.D. N.D. N.D.
stress Lomefloxacin 0.0001 mM -1.3 N.D. N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.3 N.D. N.D. N.D. N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml -1.3 N.D. N.D. N.D. N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml -1.3 N.D. N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.2 N.D. N.D. N.D. N.D.
stress Nalidixic 0.025 mg/ml -1.2 N.D. N.D. N.D. N.D.
rhizosphere rhizosphere sample 8; outgrowth in LB +1.2 N.D. N.D. N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X +1.2 N.D. N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +1.2 N.D. N.D. N.D. N.D.
soil soil sample 7; outgrowth in LB +1.2 N.D. N.D. N.D. N.D.
phage JP1 MOI 10 +1.2 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.3 N.D. N.D. N.D. N.D.
no phage control no phage control +1.3 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.3 N.D. N.D. N.D. N.D.
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +1.4 N.D. N.D. N.D. N.D.
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x +1.4 N.D. N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.4 N.D. N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +1.5 N.D. N.D. N.D. N.D.
soil soil sample 5; outgrowth in LB +1.5 N.D. N.D. N.D. N.D.
seeds Growth on radish seeds for 72 hours +1.6 N.D. N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +1.7 N.D. N.D. N.D. N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml +1.7 N.D. N.D. N.D. N.D.
seeds Growth on radish seeds for 72 hours +1.8 N.D. N.D. N.D. N.D.
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +1.8 N.D. N.D. N.D. N.D.
soil soil sample 4; outgrowth in LB +1.8 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +2.3 N.D. N.D. N.D. N.D.
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