Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_24010 and PS417_24015 are separated by 8 nucleotidesPS417_24015 and PS417_24020 are separated by 200 nucleotidesPS417_24020 and PS417_24025 are separated by 106 nucleotidesPS417_24025 and PS417_24030 are separated by 9 nucleotides PS417_24010: PS417_24010 - dihydropteroate synthase, at 5,197,985 to 5,198,836 _24010 PS417_24015: PS417_24015 - ATP-dependent metalloprotease, at 5,198,845 to 5,200,755 _24015 PS417_24020: PS417_24020 - 23S rRNA methyltransferase, at 5,200,956 to 5,201,606 _24020 PS417_24025: PS417_24025 - RNA-binding protein, at 5,201,713 to 5,202,021 _24025 PS417_24030: PS417_24030 - MFS transporter, at 5,202,031 to 5,202,435 _24030
Group Condition PS417_24010 PS417_24015 PS417_24020 PS417_24025 PS417_24030
stress Gentamicin 0.008 mg/ml N.D. N.D. N.D. N.D. -2.5
seeds Growth on radish seeds for 72 hours N.D. N.D. N.D. N.D. -1.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. -1.8
rhizosphere rhizosphere sample 1; outgrowth in LB N.D. N.D. N.D. N.D. -1.7
stress Lomefloxacin 0.0001 mM N.D. N.D. N.D. N.D. -1.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. -1.3
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. N.D. N.D. N.D. -1.3
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. N.D. N.D. N.D. -1.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. -1.2
stress Nalidixic 0.025 mg/ml N.D. N.D. N.D. N.D. -1.2
seeds Growth on radish seeds for 24 hours N.D. N.D. N.D. N.D. +1.2
rhizosphere rhizosphere sample 8; outgrowth in LB N.D. N.D. N.D. N.D. +1.2
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X N.D. N.D. N.D. N.D. +1.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. +1.2
soil soil sample 7; outgrowth in LB N.D. N.D. N.D. N.D. +1.2
phage JP1 MOI 10 N.D. N.D. N.D. N.D. +1.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. N.D. +1.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. N.D. +1.3
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x N.D. N.D. N.D. N.D. +1.4
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x N.D. N.D. N.D. N.D. +1.4
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. +1.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. +1.5
soil soil sample 5; outgrowth in LB N.D. N.D. N.D. N.D. +1.5
seeds Growth on radish seeds for 72 hours N.D. N.D. N.D. N.D. +1.6
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. N.D. +1.7
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. N.D. N.D. N.D. +1.7
seeds Growth on radish seeds for 72 hours N.D. N.D. N.D. N.D. +1.8
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. +1.8
soil soil sample 4; outgrowth in LB N.D. N.D. N.D. N.D. +1.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. N.D. +2.3
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