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Fitness for 5 genes in
Pseudomonas simiae WCS417
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500 nt
PS417_23950 and PS417_23955 are separated by 195 nucleotides
PS417_23955 and PS417_23960 are separated by 115 nucleotides
PS417_23960 and PS417_23965 are separated by 3 nucleotides
PS417_23965 and PS417_23970 are separated by 159 nucleotides
PS417_23950: PS417_23950 - polynucleotide phosphorylase/polyadenylase, at 5,186,297 to 5,188,402
_23950
PS417_23955: PS417_23955 - 30S ribosomal protein S15, at 5,188,598 to 5,188,867
_23955
PS417_23960: PS417_23960 - pseudouridine synthase, at 5,188,983 to 5,189,900
_23960
PS417_23965: PS417_23965 - ribosome-binding factor A, at 5,189,904 to 5,190,299
_23965
PS417_23970: PS417_23970 - translation initiation factor IF-2, at 5,190,459 to 5,192,984
_23970
Group
Condition
PS417
_23950
PS417
_23955
PS417
_23960
PS417
_23965
PS417
_23970
motility
inner cut, LB soft agar motility assay
-7.3
N.D.
N.D.
N.D.
N.D.
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-6.9
N.D.
N.D.
N.D.
N.D.
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-6.9
N.D.
N.D.
N.D.
N.D.
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-6.9
N.D.
N.D.
N.D.
N.D.
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-6.8
N.D.
N.D.
N.D.
N.D.
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-6.8
N.D.
N.D.
N.D.
N.D.
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-6.8
N.D.
N.D.
N.D.
N.D.
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-6.8
N.D.
N.D.
N.D.
N.D.
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-6.8
N.D.
N.D.
N.D.
N.D.
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-6.7
N.D.
N.D.
N.D.
N.D.
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-6.7
N.D.
N.D.
N.D.
N.D.
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-6.7
N.D.
N.D.
N.D.
N.D.
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-6.6
N.D.
N.D.
N.D.
N.D.
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-6.6
N.D.
N.D.
N.D.
N.D.
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-6.6
N.D.
N.D.
N.D.
N.D.
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-6.6
N.D.
N.D.
N.D.
N.D.
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-6.6
N.D.
N.D.
N.D.
N.D.
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-6.5
N.D.
N.D.
N.D.
N.D.
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-5.9
N.D.
N.D.
N.D.
N.D.
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-5.8
N.D.
N.D.
N.D.
N.D.
soil
soil sample 7; outgrowth in LB
+7.1
N.D.
N.D.
N.D.
N.D.
soil
soil sample 2; outgrowth in LB
+7.8
N.D.
N.D.
N.D.
N.D.
soil
soil sample 4; outgrowth in LB
+7.8
N.D.
N.D.
N.D.
N.D.
soil
soil sample 6; outgrowth in LB
+8.0
N.D.
N.D.
N.D.
N.D.
soil
soil sample 5; outgrowth in LB
+8.4
N.D.
N.D.
N.D.
N.D.
soil
soil sample 8; outgrowth in LB
+9.3
N.D.
N.D.
N.D.
N.D.
rhizosphere
rhizosphere sample 2; outgrowth in LB
+10.0
N.D.
N.D.
N.D.
N.D.
rhizosphere
rhizosphere sample 8; outgrowth in LB
+10.3
N.D.
N.D.
N.D.
N.D.
rhizosphere
rhizosphere sample 1; outgrowth in LB
+10.4
N.D.
N.D.
N.D.
N.D.
root
root sample 6; outgrowth in LB
+10.4
N.D.
N.D.
N.D.
N.D.
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