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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF466 and GFF467 are separated by 32 nucleotides
GFF467 and GFF468 are separated by 143 nucleotides
GFF468 and GFF469 overlap by 31 nucleotides
GFF469 and GFF470 overlap by 4 nucleotides
GFF466 - hypothetical protein, at 505,203 to 505,472
GFF466
GFF467 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 505,505 to 506,278
GFF467
GFF468 - Transcriptional regulator, LysR family, at 506,422 to 507,360
GFF468
GFF469 - hypothetical protein, at 507,330 to 507,869
GFF469
GFF470 - Transcriptional regulator, LysR family, at 507,866 to 508,840
GFF470
Group
Condition
GFF466
GFF467
GFF468
GFF469
GFF470
complex community
Community=arabino-guar; Passage=4
-2.9
-0.6
+0.1
+0.4
-0.5
complex community
Community=guar; Passage=4
-2.2
+0.3
+0.0
+0.1
-0.6
complex community
Community=arabino-guar; Passage=4
-0.5
-0.5
-0.2
-0.7
-0.2
complex community
Community=Locust bean gum; Passage=4
-1.0
+0.1
-0.0
+0.2
-1.1
vitamin
M9 with Supernatant from Cyptococcus
-1.1
-0.2
-0.2
+0.0
-0.2
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
-1.0
-0.0
-0.0
-0.0
-0.5
complex community
Community=arabino-guar; Passage=4
-1.0
-0.4
-0.2
-0.3
+0.3
complex community
Community=Kojac gum; Passage=4
-0.4
-0.6
-0.0
-0.5
+0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.5
-0.0
+0.1
-0.2
-0.5
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.3
-0.1
-0.1
+0.1
-0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.3
-0.1
-0.0
-0.4
-0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.2
+0.1
+0.1
-0.2
-0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.2
-0.0
-0.1
+0.1
-0.6
complex community
Community=Locust bean gum; Passage=4
-0.0
+0.3
-0.4
-0.2
+0.1
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.4
-0.2
-0.1
-0.1
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.4
+0.1
-0.0
-0.2
-0.3
complex community
Community=Locust bean gum; Passage=4
+1.6
-0.3
+0.3
-0.2
-1.3
complex community
Community=guar; Passage=4
-0.5
+0.2
-0.0
+0.4
+0.1
phage
phage_bap4
+0.1
-0.1
+0.2
-0.1
+0.5
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.5
+0.1
+0.1
-0.2
+0.1
no phage control
no phage control
+0.5
+0.1
+0.0
-0.1
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.6
+0.1
+0.1
-0.0
-0.1
phage
phage_bap4
+0.4
-0.1
+0.2
+0.1
+0.1
complex community
Community=guar; Passage=4
+0.4
+0.0
+0.2
-0.3
+0.5
phage
phage_bap4
+0.5
-0.0
+0.1
-0.0
+0.3
phage
phage_bap4
+0.5
-0.1
+0.0
+0.2
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.7
+0.1
+0.1
+0.1
+0.5
complex community
Community=Locust bean gum; Passage=4
+1.2
+0.1
+0.1
-0.0
+0.3
complex community
Community=arabino-guar; Passage=4
+1.3
+0.2
-0.2
+0.0
+0.5
complex community
Community=guar; Passage=4
+1.4
+0.1
+0.2
+0.2
-0.1
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